Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 0.0e+00 1237.2 640 100.0
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 0.0e+00 1221.5 640 98.8
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 0.0e+00 1195.3 640 97.0
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 5.3e-308 1060.4 653 84.8
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.1e-300 1036.2 666 82.7
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 4.1e-300 1034.2 665 82.6
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 2.0e-267 925.6 670 75.4
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 2.3e-218 762.7 608 66.1
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 6.9e-215 751.1 676 61.2
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.2e-211 740.3 657 59.8
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 2.5e-209 732.6 641 61.9
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 6.9e-207 724.5 587 64.6
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 9.0e-207 724.2 660 58.9
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.5e-206 723.4 589 64.3
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 2.2e-205 719.5 593 63.6
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 1.9e-204 716.5 587 63.9
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 5.4e-204 714.9 597 62.8
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 3.5e-203 712.2 645 59.5
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 1.0e-202 710.7 601 61.6
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 1.3e-202 710.3 660 58.0
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 3.9e-202 708.8 651 59.0
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 4.3e-201 705.3 671 57.5
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 4.3e-201 705.3 587 62.7
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 9.6e-201 704.1 678 58.8
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 2.1e-200 703.0 597 62.8
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 3.1e-199 699.1 660 58.3
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 7.6e-198 694.5 660 57.7
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 7.6e-198 694.5 655 59.2
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 1.0e-197 694.1 651 58.8
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 2.2e-197 693.0 663 56.4
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 2.9e-197 692.6 599 61.6
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 3.8e-197 692.2 713 55.3
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 4.9e-197 691.8 656 57.8
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 6.5e-197 691.4 655 57.6
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 8.4e-197 691.0 652 58.7
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.2e-196 688.7 713 55.0
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 5.5e-196 688.3 653 58.7
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 2.1e-195 686.4 654 57.6
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 2.7e-195 686.0 604 60.8
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 2.7e-195 686.0 658 57.0
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 2.7e-195 686.0 655 58.8
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 7.9e-195 684.5 647 57.0
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.0e-194 684.1 657 58.1
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.3e-194 682.9 642 58.3
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 3.9e-194 682.2 658 57.1
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 8.7e-194 681.0 651 57.3
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 8.7e-194 681.0 665 56.5
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 8.7e-194 681.0 642 58.1
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 1.1e-193 680.6 648 57.6
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 1.5e-193 680.2 659 56.9
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 2.5e-193 679.5 679 56.8
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.3e-193 678.7 642 57.9
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 5.7e-193 678.3 660 57.9
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 5.7e-193 678.3 625 58.2
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 5.7e-193 678.3 652 56.9
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 1.6e-192 676.8 654 58.3
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 4.8e-192 675.2 668 57.5
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.8e-191 673.3 663 57.6
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.8e-191 673.3 663 57.6
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 3.1e-191 672.5 661 57.5
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 2.0e-190 669.8 521 64.7
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 2.6e-190 669.5 663 55.5
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 3.4e-190 669.1 655 57.1
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.7e-189 666.8 551 64.4
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 2.9e-189 666.0 649 55.8
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.4e-188 663.7 594 60.1
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 3.2e-188 662.5 652 55.8
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 3.2e-188 662.5 567 61.0
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 2.7e-187 659.4 602 59.0
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 1.8e-186 656.8 626 57.2
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 3.3e-185 652.5 595 57.3
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 1.6e-184 650.2 663 54.4
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.8e-184 649.4 645 56.7
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.1e-180 637.5 629 57.7
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 3.2e-180 636.0 671 52.9
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 3.0e-178 629.4 611 54.5
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.1e-175 620.9 606 56.9
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.9e-172 610.1 505 62.8
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 3.6e-171 605.9 610 55.2
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 6.1e-171 605.1 732 48.6
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 2.3e-170 603.2 648 53.7
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 2.6e-169 599.7 732 48.5
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 2.2e-168 596.7 589 56.9
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 4.1e-167 592.4 653 53.6
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 7.7e-166 588.2 595 55.8
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 3.8e-165 585.9 651 52.8
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 3.8e-165 585.9 652 52.9
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.2e-163 580.9 652 52.8
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 8.0e-163 578.2 542 56.6
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.8e-162 577.0 444 67.8
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.8e-162 577.0 668 50.3
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 7.4e-161 571.6 586 55.1
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 9.7e-161 571.2 605 54.0
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 1.7e-160 570.5 646 50.6
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 3.7e-160 569.3 645 50.5
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.4e-159 567.4 638 49.8
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 7.0e-159 565.1 644 50.2
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.6e-158 563.9 556 56.5
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 7.7e-158 561.6 651 49.2
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 3.8e-157 559.3 651 48.8
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 1.1e-156 557.8 523 56.2
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.9e-156 557.0 645 50.5
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.9e-156 557.0 532 57.0
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 1.6e-155 553.9 643 50.7
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.7e-155 553.1 645 49.9
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 1.0e-154 551.2 573 53.1
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 1.8e-154 550.4 622 49.5
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 2.3e-154 550.1 643 50.5
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 8.8e-154 548.1 643 50.4
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.2e-150 537.7 669 48.3
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 4.5e-150 535.8 646 48.9
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 1.0e-149 534.6 634 48.7
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 9.4e-148 528.1 652 49.7
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.1e-147 526.9 625 49.6
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 3.6e-147 526.2 633 49.4
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 1.7e-144 517.3 614 47.2
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 5.2e-138 495.7 627 46.9
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 7.8e-134 481.9 515 53.0
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.6e-131 473.0 663 45.6
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.3e-125 454.5 634 43.1
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 1.6e-123 447.6 636 42.0
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 2.5e-116 423.7 628 44.4
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 6.6e-93 345.9 533 39.2
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 8.1e-91 339.0 569 37.1
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 1.2e-89 335.1 253 66.0
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 3.8e-88 330.1 629 34.8
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 9.3e-87 325.5 412 43.9
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.8e-85 321.2 466 39.7
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 9.6e-84 315.5 321 53.0
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.3e-83 315.1 228 66.7
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 1.3e-75 288.5 347 48.1
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 4.5e-73 280.0 216 67.1
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.3e-48 198.7 249 47.8
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 2.9e-48 197.6 122 78.7
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 8.3e-19 99.8 541 23.3
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 2.1e-06 58.5 170 25.9
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 2.1e-06 58.5 50 60.0


User provided reference genes

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