Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 0.0e+00 1339.7 642 100.0
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1336.2 642 99.7
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1265.0 641 93.3
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 0.0e+00 1257.7 638 92.9
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1247.3 647 91.5
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1209.5 640 90.3
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1127.1 640 81.2
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1117.1 725 73.9
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1107.0 641 77.4
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1107.0 638 79.3
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1106.7 641 77.4
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1106.7 677 76.7
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1103.2 641 77.5
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1102.4 641 78.9
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1101.3 640 79.2
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1099.7 633 79.1
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1098.6 657 78.2
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1098.2 641 78.3
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1095.9 642 77.4
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1094.0 642 77.9
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1089.7 643 77.9
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1087.8 642 76.9
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1087.4 642 77.1
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 0.0e+00 1087.4 659 76.6
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1087.0 642 76.2
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1087.0 640 77.3
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1085.5 640 77.0
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1085.5 639 77.2
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1085.5 641 77.8
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1085.1 640 77.2
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1081.6 642 77.1
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 0.0e+00 1081.6 634 79.2
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1080.9 642 76.5
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1077.4 640 76.6
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 1.8e-311 1072.0 643 77.8
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 1.8e-311 1072.0 633 77.9
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 2.2e-311 1071.6 641 76.3
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 4.0e-311 1070.8 642 76.3
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 1.1e-310 1069.3 687 72.5
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 2.5e-310 1068.1 641 75.8
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 7.4e-310 1066.6 640 75.8
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.6e-309 1065.4 640 75.9
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 2.8e-309 1064.7 631 77.0
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 2.8e-309 1064.7 641 75.8
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 3.7e-309 1064.3 642 75.7
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 3.7e-309 1064.3 642 76.0
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 2.4e-308 1061.6 639 76.2
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 4.1e-308 1060.8 588 83.8
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 6.9e-308 1060.1 605 81.2
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 4.5e-307 1057.4 640 75.6
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 7.7e-307 1056.6 646 75.7
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 1.7e-306 1055.4 614 79.2
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 2.9e-306 1054.7 640 75.2
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 8.5e-306 1053.1 641 74.6
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 5.5e-305 1050.4 635 76.5
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 1.6e-304 1048.9 645 75.0
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 2.1e-304 1048.5 638 74.8
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 2.1e-304 1048.5 640 75.8
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 6.1e-304 1047.0 636 75.3
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 8.8e-303 1043.1 640 75.0
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.5e-302 1042.3 642 73.8
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 9.7e-302 1039.6 793 64.7
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 1.3e-301 1039.3 632 74.4
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 1.7e-301 1038.9 660 72.1
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 2.8e-301 1038.1 641 73.0
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 5.3e-300 1033.9 638 73.2
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 1.7e-298 1028.9 641 71.9
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 1.9e-297 1025.4 594 78.3
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 3.6e-296 1021.1 636 73.7
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 7.9e-296 1020.0 639 72.6
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 1.4e-295 1019.2 636 72.8
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 1.4e-295 1019.2 646 72.1
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 5.1e-295 1017.3 636 73.1
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 4.4e-294 1014.2 636 72.8
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 7.4e-294 1013.4 641 71.8
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 2.8e-293 1011.5 636 73.0
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 4.8e-293 1010.7 640 72.8
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 8.2e-293 1010.0 636 73.1
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 1.8e-292 1008.8 796 61.9
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 7.7e-291 1003.4 636 72.6
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 7.7e-291 1003.4 636 72.6
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 7.7e-291 1003.4 636 72.6
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 8.0e-288 993.4 639 71.0
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 2.0e-283 978.8 639 69.8
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 6.3e-277 957.2 639 69.3
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 8.3e-277 956.8 640 68.8
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 4.1e-276 954.5 599 73.8
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 1.8e-271 939.1 642 68.5
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 6.6e-266 920.6 556 75.4
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.0e-258 896.7 632 68.2
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 2.3e-258 895.6 594 68.9
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 1.9e-252 875.9 546 72.3
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 3.3e-249 865.1 575 68.7
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 8.9e-247 857.1 641 60.8
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 3.1e-239 832.0 637 60.3
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 1.4e-236 823.2 640 59.7
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 5.8e-206 721.5 514 67.5
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 2.6e-190 669.5 363 81.0
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 5.3e-175 618.6 362 80.7
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 2.2e-165 586.6 367 76.0
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 2.9e-165 586.3 544 55.0
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.2e-156 556.2 373 68.9
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 9.5e-140 501.5 535 49.0
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 6.4e-120 435.6 241 77.6
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 2.0e-81 307.8 742 31.4
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 3.3e-76 290.4 152 82.2
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 6.3e-67 259.6 245 55.9
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 2.5e-55 221.1 207 53.6
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.9e-27 127.9 90 68.9
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.9e-27 127.9 72 81.9
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 2.5e-23 114.8 70 70.0
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 7.3e-23 113.2 75 65.3
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 2.3e-21 108.2 71 64.8
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 7.5e-20 103.2 70 64.3
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 3.7e-19 100.9 85 61.2
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 4.9e-19 100.5 64 68.8
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 5.4e-18 97.1 83 56.6
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 6.0e-17 93.6 64 68.8
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 6.0e-17 93.6 64 68.8
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 6.0e-17 93.6 64 68.8
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 6.2e-14 83.6 52 67.3
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 1.4e-13 82.4 107 43.9
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 3.2e-10 71.2 99 43.4
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 4.3e-07 60.8 69 44.9
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 1.6e-06 58.9 64 46.9


User provided reference genes

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