Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 4.8e-249 864.0 420 100.0
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 1.3e-238 829.3 420 95.7
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 5.0e-230 800.8 400 97.2
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 2.7e-212 741.9 423 85.3
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 8.2e-209 730.3 431 83.3
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 9.1e-192 673.7 418 78.9
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 9.2e-184 647.1 378 83.9
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 2.3e-163 579.3 413 69.7
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 2.0e-162 576.2 415 66.7
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 4.6e-159 565.1 421 64.6
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 2.9e-153 545.8 418 66.3
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 1.4e-152 543.5 403 65.5
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 2.7e-151 539.3 439 65.1
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 2.7e-151 539.3 439 65.1
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 6.6e-150 534.6 434 61.3
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 8.6e-150 534.3 412 64.8
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 1.4e-147 526.9 419 61.8
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 1.2e-146 523.9 409 62.1
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 2.0e-146 523.1 419 61.3
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 3.4e-146 522.3 436 61.2
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 7.6e-146 521.2 419 61.8
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 9.9e-146 520.8 413 62.5
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 2.5e-141 506.1 419 58.9
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 1.6e-140 503.4 407 61.2
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 2.1e-140 503.1 408 60.0
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 2.8e-140 502.7 458 57.2
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 4.8e-140 501.9 420 59.0
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 4.8e-140 501.9 426 58.9
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 1.8e-139 500.0 418 60.0
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 2.4e-139 499.6 413 61.0
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 3.1e-139 499.2 424 59.2
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 5.3e-139 498.4 415 60.7
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 9.0e-139 497.7 412 61.4
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 1.2e-138 497.3 412 60.2
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 3.4e-138 495.7 457 57.3
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 4.5e-138 495.4 409 59.4
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 2.2e-137 493.0 416 58.7
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 1.4e-136 490.3 419 57.8
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 2.1e-135 486.5 408 61.3
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 4.6e-135 485.3 410 59.3
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 6.0e-135 485.0 419 58.0
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 1.0e-134 484.2 416 60.1
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 1.3e-134 483.8 415 56.1
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 1.5e-133 480.3 426 58.0
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 3.3e-133 479.2 530 49.8
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 9.6e-133 477.6 407 56.0
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.3e-132 477.2 418 58.4
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 2.1e-132 476.5 409 58.4
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 2.8e-132 476.1 416 58.7
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 1.1e-131 474.2 416 58.2
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 1.8e-131 473.4 428 56.5
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 2.4e-131 473.0 416 57.5
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 4.0e-131 472.2 439 56.0
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 1.2e-130 470.7 426 57.3
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 1.5e-130 470.3 424 56.1
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 1.5e-130 470.3 406 58.6
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 3.4e-130 469.2 424 55.7
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 1.4e-128 463.8 434 54.4
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 4.6e-127 458.8 410 54.9
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 2.5e-125 453.0 414 56.5
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 1.3e-124 450.7 415 55.2
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 6.2e-124 448.4 419 54.9
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 8.2e-124 448.0 414 55.3
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 8.2e-124 448.0 414 55.8
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 8.2e-124 448.0 330 65.8
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 4.0e-123 445.7 419 53.2
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 2.0e-122 443.4 413 55.0
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 1.0e-121 441.0 415 54.7
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 1.3e-121 440.7 413 55.4
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 2.9e-121 439.5 417 53.2
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 9.3e-120 434.5 413 53.5
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 1.2e-119 434.1 416 54.1
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 1.6e-119 433.7 411 54.5
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 3.5e-119 432.6 361 61.2
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 3.9e-118 429.1 400 56.2
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 5.1e-118 428.7 418 53.6
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 1.5e-117 427.2 414 53.4
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 2.8e-116 422.9 414 51.9
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 6.3e-116 421.8 436 53.7
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 2.0e-114 416.8 366 59.3
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 1.6e-111 407.1 370 56.2
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 2.7e-111 406.4 436 50.9
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 5.7e-109 398.7 443 50.3
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 1.1e-104 384.4 422 48.3
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 9.4e-104 381.3 374 53.2
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 1.3e-100 370.9 333 54.1
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 3.7e-100 369.4 351 55.8
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 6.9e-99 365.2 379 51.5
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 4.7e-95 352.4 349 55.3
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 3.9e-94 349.4 415 44.3
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 2.2e-92 343.6 394 46.4
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 1.4e-86 324.3 435 42.3
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 1.5e-85 320.9 424 42.9
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.4e-83 314.3 334 51.5
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 1.2e-79 301.2 291 52.6
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 1.2e-79 301.2 297 50.8
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 2.2e-76 290.4 356 45.8
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 5.4e-75 285.8 343 46.1
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 6.6e-57 225.7 202 52.5
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 1.1e-56 224.9 161 63.4
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 8.3e-52 208.8 393 32.1
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 1.6e-47 194.5 222 48.2
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 1.8e-46 191.0 221 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 9.9e-45 185.3 228 41.2
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 2.4e-27 127.5 151 49.0
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 1.7e-25 121.3 153 45.1
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.5e-21 108.2 94 68.1
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 2.6e-21 107.5 80 61.2
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 2.9e-20 104.0 128 47.7
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 5.6e-16 89.7 62 62.9
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 3.1e-14 84.0 193 31.6
BolC8t49566H Brassica oleracea HOM05D040593 ORTHO05D033422 6.2e-07 59.7 34 73.5
Prupe.1G388100 Prunus persica HOM05D000823 ORTHO05D000088 9.0e-06 55.8 52 51.9


User provided reference genes

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