Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1682.9 853 100.0
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1671.0 854 99.5
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1661.7 853 97.8
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1599.7 857 95.2
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1530.8 862 91.2
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1510.7 825 92.2
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1497.3 832 91.7
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1377.8 840 82.1
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 814 83.0
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1340.9 808 81.9
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1333.2 875 77.5
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 836 80.6
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1326.2 822 80.7
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1322.4 852 78.1
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 839 79.4
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 817 81.0
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 822 81.1
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 822 80.8
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1317.0 815 81.7
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 821 80.4
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1314.7 823 80.7
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1314.7 823 80.7
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1313.1 822 80.5
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1311.2 856 79.1
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1310.8 823 80.6
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1310.8 842 79.2
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1310.8 833 79.5
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 834 79.6
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 839 80.5
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1306.2 822 80.3
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1306.2 821 80.1
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 833 79.4
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 817 80.9
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 827 80.0
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 831 79.1
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1302.7 819 80.2
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1302.7 841 78.1
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 790 82.4
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 825 80.5
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 818 80.0
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 818 81.4
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 838 78.4
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1292.7 844 78.8
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1292.3 823 79.3
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 822 79.6
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 822 79.6
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 832 79.3
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 820 80.7
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 821 78.9
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 871 76.5
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 856 77.5
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 820 79.9
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1285.0 836 77.6
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 809 79.5
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 818 79.2
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 866 75.9
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 820 79.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 831 78.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 815 80.2
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 816 80.1
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 836 78.3
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 828 77.9
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 820 78.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 822 78.3
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 828 77.8
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 814 78.9
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1276.5 820 80.2
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 860 72.4
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 841 78.2
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1275.4 839 77.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1273.5 825 80.1
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1273.5 817 79.1
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1273.5 818 79.1
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 817 78.9
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 815 79.3
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 820 79.4
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 822 79.3
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 816 78.6
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 815 78.7
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 822 78.1
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 817 78.7
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1267.3 825 77.0
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1265.8 816 77.9
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1263.8 818 78.4
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 819 78.4
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 776 80.9
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 824 79.1
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 821 78.9
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 821 78.9
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 821 78.9
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 821 78.9
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1260.7 827 79.4
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1260.4 802 79.2
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1260.4 836 73.4
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1260.0 821 78.3
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 841 77.8
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1258.8 816 79.4
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 832 77.9
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 832 77.9
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 832 77.9
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 820 77.0
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 843 76.4
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 822 77.5
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 826 78.0
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 845 75.9
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 816 78.7
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1251.1 821 78.8
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 809 77.3
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1245.3 822 78.6
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 786 79.6
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1244.2 822 78.6
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1243.8 817 77.0
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 840 76.0
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1237.6 822 76.8
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1237.2 825 76.2
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 824 78.2
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1236.1 816 77.5
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1228.0 827 75.5
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1227.2 829 77.3
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1225.7 862 71.9
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1218.8 862 73.3
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1213.0 775 80.3
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1207.2 874 72.5
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1207.2 774 77.9
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1206.0 809 75.4
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1194.5 823 74.8
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1188.7 888 70.2
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1186.4 758 79.7
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1173.7 808 73.8
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1168.7 825 72.6
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1160.2 692 83.1
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1158.7 815 73.0
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1156.0 812 71.2
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1156.0 754 77.3
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1146.7 820 73.3
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1140.9 819 74.5
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1122.5 808 70.2
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1118.2 723 80.5
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1114.4 814 69.8
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1113.6 775 72.6
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1090.5 832 70.4
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1083.9 766 71.1
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.4e-279 965.7 593 78.2
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.1e-267 926.0 614 71.5
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 8.2e-256 887.5 583 74.8
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.8e-255 886.3 518 82.2
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.8e-253 878.6 826 59.8
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 1.4e-247 860.1 536 82.1
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.2e-169 601.3 708 51.3
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 6.2e-155 552.4 482 59.5
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.3e-139 501.5 352 80.1
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.0e-132 477.6 309 75.1
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 2.4e-122 444.1 318 78.6
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.3e-99 366.3 397 53.1
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 7.2e-95 352.8 264 67.8
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.4e-84 317.0 580 44.3
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.4e-58 231.5 156 74.4
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.1e-53 216.1 132 78.0
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 2.0e-44 185.3 163 57.1
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 9.0e-37 159.8 503 28.6
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.0e-33 147.1 462 27.7
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.3e-32 145.2 457 28.4
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 4.3e-31 141.0 76 86.8
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 9.3e-26 123.2 68 86.8
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.7e-25 121.7 472 27.5
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 2.3e-24 118.6 441 27.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.3e-24 118.6 96 63.5
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-21 109.8 116 50.9
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 2.0e-20 105.5 61 75.4
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.1e-18 99.8 152 40.1
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-17 95.5 220 32.7
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-17 95.1 266 28.6
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.0e-11 76.6 77 46.8
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-08 64.7 70 47.1
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 3.9e-08 64.7 127 33.9
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 3.3e-07 61.6 38 78.9


User provided reference genes

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