Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 2.1e-151 539.3 329 100.0
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.0e-129 465.7 334 87.4
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 3.3e-128 462.2 327 89.6
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 6.9e-78 295.0 300 64.3
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.8e-57 227.3 287 54.4
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 8.8e-57 224.9 301 56.5
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.6e-53 214.2 285 52.6
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.6e-53 214.2 291 49.5
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 2.6e-53 213.4 293 49.5
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 5.9e-53 212.2 300 49.7
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 7.7e-53 211.8 293 49.5
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.2e-52 210.3 293 49.1
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 3.8e-52 209.5 287 49.5
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 6.5e-52 208.8 301 49.5
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 8.5e-52 208.4 293 49.5
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.9e-51 207.2 293 48.8
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 9.4e-51 204.9 289 48.4
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 4.7e-50 202.6 285 49.8
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 6.1e-50 202.2 287 49.8
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 6.1e-50 202.2 285 49.5
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 6.1e-50 202.2 341 47.2
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.3e-49 200.3 285 49.1
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 6.7e-49 198.7 295 50.2
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 6.7e-49 198.7 290 49.0
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.5e-48 197.6 295 49.5
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 2.0e-48 197.2 294 46.6
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.0e-48 197.2 299 49.8
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.6e-48 196.8 294 48.6
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 4.4e-48 196.1 290 47.9
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 5.7e-48 195.7 287 47.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 5.7e-48 195.7 287 47.7
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.7e-48 195.7 284 47.2
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 7.5e-48 195.3 298 48.7
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 7.5e-48 195.3 299 48.5
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.5e-48 195.3 287 48.1
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.7e-47 194.1 295 47.5
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 1.7e-47 194.1 315 45.7
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.2e-47 193.7 298 47.7
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.8e-47 193.4 287 47.7
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 4.8e-47 192.6 297 50.5
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 6.3e-47 192.2 291 51.9
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 8.2e-47 191.8 301 46.2
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.4e-46 191.0 297 46.8
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.4e-46 191.0 287 47.4
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.4e-46 190.3 294 48.0
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 7.0e-46 188.7 290 47.6
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 7.0e-46 188.7 280 47.9
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 7.0e-46 188.7 295 47.1
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 7.0e-46 188.7 290 51.0
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 2.0e-45 187.2 291 47.8
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 5.9e-45 185.7 292 47.6
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.0e-44 184.9 296 46.6
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 2.9e-44 183.3 294 48.3
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 2.9e-44 183.3 255 49.8
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 3.8e-44 183.0 261 48.7
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 5.0e-44 182.6 301 44.2
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 6.5e-44 182.2 372 40.6
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 8.5e-44 181.8 303 44.9
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 8.5e-44 181.8 289 44.3
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 8.5e-44 181.8 292 46.9
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 7.2e-43 178.7 289 43.3
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 2.7e-42 176.8 315 42.9
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 4.7e-42 176.0 295 44.4
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 4.7e-42 176.0 290 48.6
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 6.1e-42 175.6 293 44.7
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.0e-41 174.9 289 44.6
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 1.0e-41 174.9 292 50.7
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.8e-41 174.1 322 41.6
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.3e-41 173.7 314 43.9
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.0e-41 173.3 289 46.7
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.8e-41 172.2 248 48.4
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 1.2e-40 171.4 285 47.4
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 2.0e-40 170.6 310 46.1
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 7.5e-40 168.7 251 48.2
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.3e-39 167.9 284 49.3
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.7e-39 167.5 284 49.3
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.8e-39 166.0 254 47.2
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 1.4e-38 164.5 295 42.0
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 2.4e-38 163.7 279 45.5
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 3.1e-38 163.3 315 42.9
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 9.1e-38 161.8 294 44.9
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.2e-37 161.4 287 44.6
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 1.6e-37 161.0 284 45.8
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 2.7e-37 160.2 286 42.7
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 2.7e-37 160.2 296 42.9
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 1.0e-36 158.3 294 43.2
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.3e-36 157.9 321 43.9
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 2.3e-36 157.1 283 43.1
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 2.9e-36 156.8 301 42.5
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 6.6e-36 155.6 294 43.2
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 8.6e-36 155.2 300 42.3
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 5.5e-35 152.5 295 41.7
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 1.2e-34 151.4 313 41.5
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.2e-34 151.4 329 41.3
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 2.8e-34 150.2 305 42.0
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.8e-34 150.2 288 43.4
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 5.2e-33 146.0 290 42.4
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 6.8e-33 145.6 284 43.3
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 6.8e-33 145.6 312 40.7
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 8.9e-33 145.2 310 39.4
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.0e-32 144.1 230 51.3
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.6e-32 143.7 268 43.7
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 5.7e-32 142.5 298 41.3
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 9.8e-32 141.7 313 40.9
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.7e-31 141.0 297 41.8
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.7e-31 141.0 295 43.4
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 2.8e-31 140.2 288 41.0
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 3.7e-31 139.8 313 41.9
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 3.7e-31 139.8 246 40.2
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.4e-30 137.9 237 42.6
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 7.0e-30 135.6 248 43.1
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.2e-29 134.8 265 40.4
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.2e-29 134.8 289 46.0
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 2.0e-29 134.0 308 42.2
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 3.5e-29 133.3 312 38.5
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 3.5e-29 133.3 312 38.5
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 7.8e-29 132.1 312 39.1
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 7.8e-29 132.1 168 53.6
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 1.0e-28 131.7 311 40.8
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 1.0e-28 131.7 311 40.8
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 1.0e-28 131.7 311 40.8
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.3e-28 131.3 291 37.8
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 1.7e-28 131.0 262 40.1
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.9e-28 130.2 288 38.5
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 4.3e-27 126.3 278 38.8
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 7.3e-27 125.6 301 38.9
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 1.2e-26 124.8 335 38.5
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.4e-25 121.3 287 36.6
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.4e-25 121.3 136 57.4
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 2.3e-25 120.6 243 39.1
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 2.0e-24 117.5 291 41.2
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 3.4e-24 116.7 181 52.5
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.7e-23 114.4 312 37.5
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.9e-23 113.6 284 38.0
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.7e-23 113.2 222 42.3
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 6.4e-23 112.5 295 39.3
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.9e-22 110.9 324 35.8
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 7.0e-22 109.0 185 49.2
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 7.0e-22 109.0 172 47.1
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 3.5e-21 106.7 288 33.0
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 6.0e-21 105.9 297 41.4
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.9e-19 100.9 295 33.2
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.8e-18 97.1 241 36.9
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.8e-18 97.1 241 36.9
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 8.0e-18 95.5 145 45.5
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 2.3e-17 94.0 230 39.1
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 4.0e-17 93.2 80 63.8
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 4.0e-17 93.2 288 32.3
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 2.0e-16 90.9 289 34.3
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 8.3e-15 85.5 277 32.5
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 9.2e-14 82.0 287 31.7
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 7.8e-13 79.0 107 50.5
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.9e-11 74.3 91 53.8
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 3.3e-11 73.6 276 29.7
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 4.0e-09 66.6 304 32.9
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 7.5e-08 62.4 298 28.9
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 9.9e-08 62.0 312 26.3
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.7e-07 60.1 71 56.3
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 4.9e-07 59.7 304 27.6
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 1.1e-06 58.5 312 27.6
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.9e-06 57.8 314 27.4
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 2.4e-06 57.4 274 27.7
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.4e-06 57.4 76 42.1
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 4.1e-06 56.6 178 36.0
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 5.4e-06 56.2 166 33.7
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 5.4e-06 56.2 320 24.7
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 5.4e-06 56.2 67 52.2
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 5.4e-06 56.2 80 43.8
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 7.1e-06 55.8 259 30.9
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 7.1e-06 55.8 356 26.7
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 7.1e-06 55.8 250 26.4
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 9.2e-06 55.5 301 28.2
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 9.2e-06 55.5 357 26.6
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 9.2e-06 55.5 106 40.6


User provided reference genes

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