Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g032670 Solanum pennellii HOM05D000955 ORTHO05D001429 1.2e-38 162.5 75 100.0
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 1.4e-31 139.0 71 91.5
PGSC0003DMG400007983 Solanum tuberosum HOM05D000955 ORTHO05D001429 7.2e-31 136.7 74 87.8
CAN.G371.26 Capsicum annuum HOM05D000955 ORTHO05D001429 5.3e-26 120.6 75 78.7
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 5.0e-16 87.4 69 62.3
QL02p005168 Quercus lobata HOM05D000955 ORTHO05D001429 4.2e-15 84.3 66 59.1
Sopen04g032680 Solanum pennellii HOM05D000955 ORTHO05D001429 4.2e-15 84.3 69 60.9
Peaxi162Scf00252g00115 Petunia axillaris HOM05D000955 ORTHO05D001429 7.2e-15 83.6 72 54.2
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 1.6e-14 82.4 67 56.7
CiPaw.15G058900 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.6e-14 82.4 66 57.6
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 2.1e-14 82.0 66 57.6
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 3.6e-14 81.3 66 56.1
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 4.7e-14 80.9 66 56.1
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.0e-13 79.7 70 55.7
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 1.8e-13 79.0 64 59.4
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.3e-13 78.6 65 56.9
CiPaw.16G045200 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.3e-13 78.6 66 56.1
Cfa018536 Carpinus fangiana HOM05D000955 ORTHO05D001429 3.0e-13 78.2 66 54.5
CiPaw.15G060000 Carya illinoinensis HOM05D000955 ORTHO05D001429 5.2e-13 77.4 66 54.5
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 6.8e-13 77.0 66 53.0
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.8e-13 77.0 63 58.7
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 6.8e-13 77.0 63 58.7
Atru.chr13.678 Acer truncatum HOM05D000955 ORTHO05D001429 1.5e-12 75.9 64 56.2
Gohir.D06G016300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 5.7e-12 73.9 64 51.6
Gorai.010G019200 Gossypium raimondii HOM05D000955 ORTHO05D001429 5.7e-12 73.9 64 51.6
Sc15g0003450 Simmondsia chinensis HOM05D000955 ORTHO05D001429 5.7e-12 73.9 63 57.1
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 9.7e-12 73.2 65 55.4
CiPaw.16G045300 Carya illinoinensis HOM05D000955 ORTHO05D001429 9.7e-12 73.2 66 54.5
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 9.7e-12 73.2 61 59.0
Atru.chr13.677 Acer truncatum HOM05D000955 ORTHO05D001429 1.3e-11 72.8 61 59.0
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 1.3e-11 72.8 66 54.5
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 1.7e-11 72.4 67 53.7
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 2.2e-11 72.0 64 51.6
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 2.2e-11 72.0 67 50.7
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 2.8e-11 71.6 64 53.1
COL.COLO4_26499 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.8e-11 71.6 66 51.5
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.7e-11 71.2 66 53.0
Atru.chr13.660 Acer truncatum HOM05D000955 ORTHO05D001429 4.8e-11 70.9 65 49.2
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 6.3e-11 70.5 66 51.5
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.3e-11 70.1 66 53.0
Thecc.08G009100 Theobroma cacao HOM05D000955 ORTHO05D001429 8.3e-11 70.1 65 52.3
Atru.chr13.684 Acer truncatum HOM05D000955 ORTHO05D001429 1.1e-10 69.7 64 51.6
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 1.4e-10 69.3 64 54.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.4e-10 69.3 66 53.0
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.4e-10 69.3 66 53.0
Manes.05G172901 Manihot esculenta HOM05D000955 ORTHO05D001429 1.4e-10 69.3 66 50.0
COL.COLO4_08736 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.8e-10 68.9 70 50.0
QL11p020910 Quercus lobata HOM05D000955 ORTHO05D001429 1.8e-10 68.9 66 50.0
Atru.chr13.683 Acer truncatum HOM05D000955 ORTHO05D001429 2.4e-10 68.6 64 51.6
Manes.05G172701 Manihot esculenta HOM05D000955 ORTHO05D001429 3.1e-10 68.2 66 50.0
Manes.05G172801 Manihot esculenta HOM05D000955 ORTHO05D001429 3.1e-10 68.2 66 48.5
Manes.05G173400 Manihot esculenta HOM05D000955 ORTHO05D001429 3.1e-10 68.2 64 48.4
QL02p005180 Quercus lobata HOM05D000955 ORTHO05D001429 3.1e-10 68.2 66 50.0
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 4.1e-10 67.8 66 51.5
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 4.1e-10 67.8 67 52.2
Manes.05G173000 Manihot esculenta HOM05D000955 ORTHO05D001429 5.3e-10 67.4 66 48.5
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 5.3e-10 67.4 72 51.4
QL02p005106 Quercus lobata HOM05D000955 ORTHO05D001429 7.0e-10 67.0 66 48.5
Cfa018542 Carpinus fangiana HOM05D000955 ORTHO05D001429 9.1e-10 66.6 66 47.0
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 9.1e-10 66.6 66 50.0
Potri.008G079066 Populus trichocarpa HOM05D000955 ORTHO05D001429 9.1e-10 66.6 66 50.0
CiPaw.15G059000 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.6e-09 65.9 66 47.0
Gorai.010G019300 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.6e-09 65.9 66 51.5
QL02p005235 Quercus lobata HOM05D000955 ORTHO05D001429 1.6e-09 65.9 66 51.5
Thecc.08G009300 Theobroma cacao HOM05D000955 ORTHO05D001429 1.6e-09 65.9 64 50.0
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 2.0e-09 65.5 67 43.3
EL10Ac1g00552 Beta vulgaris HOM05D000955 ORTHO05D001429 2.7e-09 65.1 65 49.2
Potri.008G079132 Populus trichocarpa HOM05D000955 ORTHO05D001429 2.7e-09 65.1 63 50.8
QL02p005175 Quercus lobata HOM05D000955 ORTHO05D001429 2.7e-09 65.1 64 53.1
Manes.04G102700 Manihot esculenta HOM05D000955 ORTHO05D001429 3.5e-09 64.7 66 47.0
Potri.002G126900 Populus trichocarpa HOM05D000955 ORTHO05D001429 3.5e-09 64.7 66 48.5
CAN.G371.27 Capsicum annuum HOM05D000955 ORTHO05D001429 4.5e-09 64.3 69 49.3
Gohir.A01G119200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.5e-09 64.3 64 51.6
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.5e-09 64.3 63 49.2
Atru.chr13.674 Acer truncatum HOM05D000955 ORTHO05D001429 5.9e-09 63.9 67 47.8
Gohir.D01G107400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 5.9e-09 63.9 64 51.6
Gorai.002G131800 Gossypium raimondii HOM05D000955 ORTHO05D001429 5.9e-09 63.9 64 51.6
Gohir.A06G017900 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.7e-09 63.5 64 46.9
Gohir.D06G016200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.7e-09 63.5 64 46.9
Gorai.010G019100 Gossypium raimondii HOM05D000955 ORTHO05D001429 7.7e-09 63.5 64 46.9
Sc26g0000780 Simmondsia chinensis HOM05D000955 ORTHO05D001429 7.7e-09 63.5 66 47.0
PGSC0003DMG400008043 Solanum tuberosum HOM05D000955 ORTHO05D001429 7.7e-09 63.5 67 41.8
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 1.0e-08 63.2 66 48.5
Ah.05g171940 Amaranthus hybridus HOM05D000955 ORTHO05D001429 1.0e-08 63.2 66 47.0
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.0e-08 63.2 66 47.0
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.0e-08 63.2 67 41.8
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.0e-08 63.2 67 41.8
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.0e-08 63.2 63 49.2
Thecc.08G009800 Theobroma cacao HOM05D000955 ORTHO05D001429 1.0e-08 63.2 65 47.7
AUR62014426 Chenopodium quinoa HOM05D000955 ORTHO05D001429 1.3e-08 62.8 65 46.2
AUR62034571 Chenopodium quinoa HOM05D000955 ORTHO05D001429 1.3e-08 62.8 65 46.2
COL.COLO4_26496 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.3e-08 62.8 58 55.2
Manes.04G102900 Manihot esculenta HOM05D000955 ORTHO05D001429 1.3e-08 62.8 66 45.5
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 1.3e-08 62.8 66 43.9
Sc26g0000770 Simmondsia chinensis HOM05D000955 ORTHO05D001429 1.3e-08 62.8 66 47.0
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 1.7e-08 62.4 64 51.6
AUR62019161 Chenopodium quinoa HOM05D000955 ORTHO05D001429 1.7e-08 62.4 66 48.5
AUR62034572 Chenopodium quinoa HOM05D000955 ORTHO05D001429 1.7e-08 62.4 66 48.5
COL.COLO4_26493 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.7e-08 62.4 65 47.7
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-08 62.4 67 41.8
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.7e-08 62.4 63 47.6
AUR62014425 Chenopodium quinoa HOM05D000955 ORTHO05D001429 2.2e-08 62.0 66 48.5
Manes.04G102800 Manihot esculenta HOM05D000955 ORTHO05D001429 2.2e-08 62.0 66 45.5
Manes.04G103000 Manihot esculenta HOM05D000955 ORTHO05D001429 2.2e-08 62.0 66 45.5
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.2e-08 62.0 67 40.3
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 2.2e-08 62.0 64 46.9
CSS0046588 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.9e-08 61.6 66 48.5
Manes.04G103100 Manihot esculenta HOM05D000955 ORTHO05D001429 2.9e-08 61.6 66 45.5
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 2.9e-08 61.6 64 50.0
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 3.8e-08 61.2 66 47.0
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.8e-08 61.2 65 46.2
Nitab4.5_0013573g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.8e-08 61.2 67 40.3
Cpa.g.sc49.10 Carica papaya HOM05D000955 ORTHO05D001429 5.0e-08 60.8 66 45.5
Sopen07g012140 Solanum pennellii HOM05D000955 ORTHO05D001429 5.0e-08 60.8 63 46.0
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 5.0e-08 60.8 66 50.0
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 5.0e-08 60.8 63 46.0
CSS0009132 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 6.5e-08 60.5 66 47.0
CSS0027110 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 6.5e-08 60.5 66 47.0
CAN.G445.5 Capsicum annuum HOM05D000955 ORTHO05D001429 6.5e-08 60.5 63 46.0
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.5e-08 60.5 67 40.3
CSS0003971 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 8.5e-08 60.1 66 47.0
COL.COLO4_08735 Corchorus olitorius HOM05D000955 ORTHO05D001429 8.5e-08 60.1 65 44.6
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.5e-08 60.1 65 46.2
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 8.5e-08 60.1 65 46.2
Manes.04G102000 Manihot esculenta HOM05D000955 ORTHO05D001429 8.5e-08 60.1 66 43.9
Manes.05G172600 Manihot esculenta HOM05D000955 ORTHO05D001429 8.5e-08 60.1 67 44.8
Prupe.1G437200 Prunus persica HOM05D000955 ORTHO05D001429 8.5e-08 60.1 66 50.0
QL02p005131 Quercus lobata HOM05D000955 ORTHO05D001429 8.5e-08 60.1 64 50.0
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.1e-07 59.7 59 50.8
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 1.1e-07 59.7 63 47.6
CSS0008676 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.5e-07 59.3 66 45.5
CiPaw.15G060200 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.5e-07 59.3 65 49.2
CiPaw.15G060300 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.5e-07 59.3 68 47.1
CiPaw.15G060400 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.5e-07 59.3 65 47.7
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 1.5e-07 59.3 67 43.3
HanXRQChr09g0267841 Helianthus annuus HOM05D000955 ORTHO05D001429 1.5e-07 59.3 68 42.6
Thecc.04G032600 Theobroma cacao HOM05D000955 ORTHO05D001429 1.5e-07 59.3 64 45.3
Thecc.08G009700 Theobroma cacao HOM05D000955 ORTHO05D001429 1.5e-07 59.3 64 48.4
CSS0049247 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.9e-07 58.9 66 45.5
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.9e-07 58.9 67 38.8
Nitab4.5_0001847g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.9e-07 58.9 67 37.3
Atru.chr13.672 Acer truncatum HOM05D000955 ORTHO05D001429 2.5e-07 58.5 67 44.8
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 2.5e-07 58.5 63 47.6
Manes.18G036400 Manihot esculenta HOM05D000955 ORTHO05D001429 2.5e-07 58.5 57 50.9
Nitab4.5_0002468g0040 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.5e-07 58.5 67 37.3
Dinv29919 Davidia involucrata HOM05D000955 ORTHO05D001429 3.2e-07 58.2 66 47.0
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.2e-07 58.2 67 38.8
Cpa.g.sc49.9 Carica papaya HOM05D000955 ORTHO05D001429 4.2e-07 57.8 66 45.5
COL.COLO4_26488 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.2e-07 57.8 64 46.9
Atru.chr13.662 Acer truncatum HOM05D000955 ORTHO05D001429 5.5e-07 57.4 67 40.3
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 5.5e-07 57.4 66 40.9
CAN.G371.23 Capsicum annuum HOM05D000955 ORTHO05D001429 7.2e-07 57.0 66 39.4
Gorai.005G102600 Gossypium raimondii HOM05D000955 ORTHO05D001429 7.2e-07 57.0 63 47.6
Sopen01g015530 Solanum pennellii HOM05D000955 ORTHO05D001429 7.2e-07 57.0 63 44.4
CAN.G371.24 Capsicum annuum HOM05D000955 ORTHO05D001429 9.4e-07 56.6 67 40.3
CiPaw.16G044800 Carya illinoinensis HOM05D000955 ORTHO05D001429 9.4e-07 56.6 65 46.2
COL.COLO4_26489 Corchorus olitorius HOM05D000955 ORTHO05D001429 9.4e-07 56.6 64 43.8
Sopen12g030730 Solanum pennellii HOM05D000955 ORTHO05D001429 9.4e-07 56.6 66 47.0
Sed0002759 Sechium edule HOM05D000955 ORTHO05D001429 1.2e-06 56.2 66 40.9
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 1.6e-06 55.8 63 46.0
COL.COLO4_26495 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.6e-06 55.8 58 46.6
CAN.G371.25 Capsicum annuum HOM05D000955 ORTHO05D001429 2.1e-06 55.5 67 38.8
Ciclev10003536m.g Citrus clementina HOM05D000955 ORTHO05D001429 2.1e-06 55.5 66 42.4
Nitab4.5_0000686g0190 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.1e-06 55.5 66 37.9
CiPaw.15G059700 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.7e-06 55.1 72 43.1
Gohir.D02G091500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.7e-06 55.1 63 46.0
Manes.05G173100 Manihot esculenta HOM05D000955 ORTHO05D001429 2.7e-06 55.1 66 43.9
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 2.7e-06 55.1 57 52.6
Rhsim07G0228800 Rhododendron simsii HOM05D000955 ORTHO05D001429 2.7e-06 55.1 68 45.6
Prupe.1G436700 Prunus persica HOM05D000955 ORTHO05D001429 3.6e-06 54.7 65 46.2
Rhsim07G0228700 Rhododendron simsii HOM05D000955 ORTHO05D001429 3.6e-06 54.7 66 42.4
CAN.G1518.8 Capsicum annuum HOM05D000955 ORTHO05D001429 4.7e-06 54.3 67 47.8
CiPaw.15G059500 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.7e-06 54.3 68 42.6
CiPaw.15G059900 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.7e-06 54.3 72 41.7
CiPaw.15G060700 Carya illinoinensis HOM05D000955 ORTHO05D001429 6.1e-06 53.9 68 42.6
Haze_17535 Corylus avellana HOM05D000955 ORTHO05D001429 6.1e-06 53.9 65 46.2
Lsat_1_v5_gn_4_125420 Lactuca sativa HOM05D000955 ORTHO05D001429 6.1e-06 53.9 66 39.4
Solyc01g150126.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 6.1e-06 53.9 67 40.3
Cfa018534 Carpinus fangiana HOM05D000955 ORTHO05D001429 8.0e-06 53.5 66 45.5
Gohir.A05G261550 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.0e-06 53.5 57 52.6
Gorai.005G102700 Gossypium raimondii HOM05D000955 ORTHO05D001429 8.0e-06 53.5 64 45.3
Manes.18G036200 Manihot esculenta HOM05D000955 ORTHO05D001429 8.0e-06 53.5 64 40.6
Prupe.1G436600 Prunus persica HOM05D000955 ORTHO05D001429 8.0e-06 53.5 66 43.9


User provided reference genes

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