Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 3.4e-124 448.4 232 100.0
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.5e-119 433.0 232 97.0
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 5.3e-117 424.5 232 93.5
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.7e-102 376.3 230 83.9
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 8.3e-94 347.4 234 78.2
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 3.1e-93 345.5 236 77.5
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 7.3e-74 281.2 233 62.7
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.4e-72 276.9 230 60.9
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 6.8e-72 274.6 225 62.2
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 1.4e-69 266.9 231 59.7
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 3.2e-69 265.8 226 61.9
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 7.8e-68 261.2 223 60.1
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.7e-67 260.0 231 58.0
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 2.3e-67 259.6 224 59.4
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 2.3e-67 259.6 231 58.4
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 1.9e-66 256.5 224 59.8
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 7.3e-66 254.6 231 56.3
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 7.3e-66 254.6 233 57.1
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 9.5e-66 254.2 227 60.4
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 3.6e-65 252.3 216 61.1
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 4.7e-65 251.9 221 60.6
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 2.4e-64 249.6 232 55.2
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 3.1e-64 249.2 231 56.7
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 4.0e-64 248.8 233 58.4
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 1.5e-63 246.9 226 58.0
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 2.0e-63 246.5 221 58.4
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 2.6e-63 246.1 225 56.9
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 3.4e-63 245.7 213 62.0
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 4.4e-63 245.4 206 63.6
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 1.7e-62 243.4 222 59.5
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.1e-61 240.7 221 55.7
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.9e-61 240.0 222 56.8
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 7.1e-61 238.0 221 58.8
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 7.1e-61 238.0 222 56.3
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 1.6e-60 236.9 223 57.4
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 2.7e-60 236.1 221 58.8
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 6.0e-60 235.0 223 57.0
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 7.8e-60 234.6 229 53.7
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 3.9e-59 232.3 224 54.9
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 3.9e-59 232.3 221 57.0
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 8.7e-59 231.1 234 51.7
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.1e-58 230.7 221 56.1
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 1.9e-58 229.9 221 56.6
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 9.6e-58 227.6 199 58.8
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 2.1e-57 226.5 223 56.1
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 2.1e-57 226.5 198 59.6
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 2.8e-57 226.1 223 56.1
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 1.4e-56 223.8 200 60.0
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 4.4e-55 218.8 230 51.7
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 5.8e-55 218.4 209 55.0
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 5.8e-55 218.4 223 56.1
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 6.4e-54 214.9 232 49.6
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 7.1e-53 211.5 221 48.4
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 4.6e-52 208.8 118 89.8
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 7.8e-52 208.0 169 60.4
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 1.7e-51 206.8 197 57.9
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 3.0e-51 206.1 201 57.2
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.0e-51 206.1 177 59.3
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.0e-51 206.1 177 59.3
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 6.6e-51 204.9 205 53.7
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 7.3e-50 201.4 227 52.4
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 3.1e-48 196.1 205 52.2
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 7.6e-47 191.4 204 51.0
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 1.3e-46 190.7 207 49.3
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 1.9e-45 186.8 186 54.8
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.1e-42 177.6 153 58.8
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.1e-41 173.3 163 54.6
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 6.9e-40 168.3 224 45.5
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.5e-39 167.2 224 44.6
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 2.7e-36 156.4 121 66.9
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 7.9e-36 154.8 143 61.5
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 7.9e-36 154.8 144 54.9
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 7.9e-36 154.8 118 64.4
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 5.1e-35 152.1 112 66.1
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 1.9e-34 150.2 130 59.2
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 1.4e-32 144.1 112 62.5
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 7.6e-31 138.3 106 67.9
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 4.2e-29 132.5 101 65.3
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 6.0e-28 128.6 158 47.5
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.3e-27 126.7 135 51.9
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 2.3e-27 126.7 112 56.2
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.0e-27 126.3 119 54.6
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.0e-27 126.3 119 54.6
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 2.5e-26 123.2 120 57.5
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 5.7e-26 122.1 88 69.3
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 6.3e-25 118.6 227 38.3
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.8e-24 117.1 135 48.9
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.8e-24 117.1 127 49.6
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 4.5e-23 112.5 109 53.2
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 9.4e-21 104.8 221 29.0
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 3.0e-19 99.8 118 43.2
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 1.1e-18 97.8 131 44.3
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 1.5e-18 97.4 74 64.9
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.9e-18 97.1 65 70.8
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 1.9e-18 97.1 131 42.7
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 9.7e-18 94.7 94 52.1
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 2.2e-17 93.6 70 65.7
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 6.3e-17 92.0 83 59.0
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 9.1e-16 88.2 91 47.3
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 1.7e-14 84.0 159 28.3
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 6.5e-14 82.0 102 39.2
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 1.4e-13 80.9 73 54.8
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 9.1e-08 61.6 82 39.0


User provided reference genes

Program Settings