Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 5.7e-236 820.5 399 100.0
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.9e-219 765.0 399 95.2
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.2e-210 734.9 399 91.5
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 7.9e-185 650.6 403 81.6
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.3e-175 618.2 409 77.5
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 1.2e-172 610.1 407 75.9
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.3e-166 590.1 398 76.6
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.8e-155 552.0 407 68.8
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.6e-153 545.4 407 68.6
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 7.9e-153 544.3 407 67.8
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 6.7e-152 541.2 407 67.6
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 1.3e-150 537.0 408 67.4
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 6.3e-142 508.1 407 63.4
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 4.1e-141 505.4 407 64.1
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.7e-139 500.0 420 61.9
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 5.0e-139 498.4 407 63.4
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 5.0e-139 498.4 407 62.2
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 6.5e-139 498.0 407 64.1
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 8.5e-139 497.7 407 62.7
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 4.2e-138 495.4 408 62.5
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 5.5e-138 495.0 407 61.9
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 9.4e-138 494.2 408 62.3
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.2e-137 493.8 407 62.7
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 2.7e-137 492.7 408 60.0
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.8e-136 490.0 411 62.8
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 3.0e-136 489.2 411 62.8
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.0e-136 488.8 409 62.3
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 5.2e-136 488.4 407 61.7
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 6.8e-136 488.0 406 61.8
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 6.8e-136 488.0 366 68.0
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 2.0e-135 486.5 407 60.9
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 5.7e-135 485.0 408 61.3
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.3e-134 483.8 408 61.5
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 2.2e-134 483.0 412 61.2
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 6.3e-134 481.5 408 58.3
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.1e-133 480.7 409 61.6
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 1.4e-133 480.3 408 58.3
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 1.8e-133 479.9 407 60.9
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.8e-133 479.9 407 60.0
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 5.9e-132 474.9 408 60.3
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 5.9e-132 474.9 442 58.6
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.0e-131 474.2 407 60.0
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 1.3e-131 473.8 406 60.3
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.7e-131 473.4 409 59.9
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 2.2e-131 473.0 409 60.9
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 2.9e-131 472.6 403 61.5
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.1e-130 470.7 407 59.5
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 1.5e-130 470.3 409 60.6
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.5e-130 469.5 407 59.7
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.2e-130 468.8 407 60.0
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 2.7e-129 466.1 407 60.2
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 6.1e-129 464.9 416 58.4
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 8.0e-129 464.5 407 59.5
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.0e-128 464.2 409 59.4
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.4e-128 463.8 446 57.0
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 2.3e-128 463.0 409 59.7
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.8e-128 461.1 407 58.7
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.5e-127 460.3 407 58.7
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 2.0e-127 459.9 408 59.1
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.0e-127 459.9 407 58.0
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 2.0e-127 459.9 409 59.4
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 4.4e-127 458.8 411 59.9
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 7.5e-127 458.0 405 58.3
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 3.7e-126 455.7 408 59.8
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.1e-125 452.2 410 57.6
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 7.0e-125 451.4 407 59.0
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.6e-124 450.3 407 57.2
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 2.0e-124 449.9 401 58.1
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 2.7e-124 449.5 410 58.0
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 3.5e-124 449.1 419 57.3
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.0e-123 447.6 408 56.1
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.0e-123 447.6 408 56.9
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.7e-123 446.8 407 58.2
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 1.7e-123 446.8 416 57.9
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.7e-123 446.8 407 57.0
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 8.6e-123 444.5 476 51.5
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 8.6e-123 444.5 409 56.2
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 8.6e-123 444.5 410 58.3
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-122 444.1 408 58.6
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.1e-122 444.1 408 58.6
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 1.5e-122 443.7 408 55.6
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.5e-122 443.7 407 55.8
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 3.3e-122 442.6 410 56.6
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 7.2e-122 441.4 408 55.4
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 4.7e-121 438.7 403 57.6
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 1.8e-120 436.8 398 56.5
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 5.2e-120 435.3 424 55.2
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 1.5e-119 433.7 407 55.3
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 2.6e-119 433.0 394 57.4
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 8.3e-118 427.9 407 54.5
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.4e-117 427.2 401 58.1
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.8e-117 426.8 403 54.6
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 2.4e-117 426.4 401 58.1
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 4.1e-117 425.6 405 56.5
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 5.4e-117 425.2 407 56.3
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.0e-116 423.3 415 55.7
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.7e-116 422.9 432 53.9
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.7e-116 422.9 432 53.9
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.5e-116 422.5 399 54.6
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 2.9e-115 419.5 403 55.1
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 1.5e-114 417.2 403 54.8
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.3e-114 416.0 406 54.7
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 4.3e-114 415.6 408 52.7
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 4.3e-114 415.6 404 54.7
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 3.6e-113 412.5 372 58.1
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.0e-112 411.0 401 54.1
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 6.8e-112 408.3 385 56.1
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 2.0e-111 406.8 347 59.7
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 9.8e-111 404.4 408 54.7
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.9e-109 400.2 403 54.6
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.9e-109 400.2 342 59.4
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.2e-108 397.5 403 54.3
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.6e-108 397.1 412 53.6
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 1.1e-106 391.0 394 51.8
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 4.3e-106 389.0 410 51.7
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 1.1e-104 384.4 409 52.6
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 1.5e-103 380.6 397 52.4
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.5e-103 380.6 398 52.3
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 4.4e-103 379.0 394 53.0
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-102 377.5 399 51.9
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 6.4e-102 375.2 399 52.1
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 3.9e-99 365.9 368 53.3
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 1.9e-98 363.6 245 71.8
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.2e-97 360.9 367 52.9
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 2.1e-97 360.1 349 55.3
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 1.8e-96 357.1 268 66.8
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 7.6e-95 351.7 362 51.9
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 7.6e-95 351.7 362 51.9
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 1.3e-94 350.9 357 51.5
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.7e-94 350.5 362 51.7
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 7.1e-93 345.1 320 55.9
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.1e-91 339.0 339 51.9
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 3.1e-88 329.7 342 51.5
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 3.2e-85 319.7 280 55.4
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 4.6e-84 315.8 400 48.0
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 6.2e-81 305.4 323 50.5
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.8e-80 303.9 256 60.2
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 4.9e-78 295.8 405 42.2
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.7e-76 290.0 266 56.8
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.3e-75 287.7 258 58.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.3e-74 283.1 228 61.4
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 7.4e-74 282.0 395 40.3
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.9e-72 275.4 252 56.3
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 2.0e-71 273.9 402 40.3
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 1.6e-68 264.2 405 40.2
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.6e-68 264.2 241 56.8
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 2.5e-66 256.9 410 38.0
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 9.0e-64 248.4 282 49.3
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.9e-62 243.4 156 73.7
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.6e-52 211.1 373 39.4
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 2.7e-52 210.3 437 33.9
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.2e-46 190.7 189 52.9
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 2.6e-39 167.2 363 33.9
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 2.2e-38 164.1 123 65.9
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.1e-37 161.8 127 67.7
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.6e-36 157.9 128 64.8
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 5.3e-32 142.9 123 57.7
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 2.0e-31 141.0 326 32.2
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 1.8e-27 127.9 381 29.9
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 8.8e-27 125.6 90 63.3
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 7.5e-26 122.5 218 34.9
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-25 121.7 217 34.6
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.1e-24 118.6 321 25.5
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 3.6e-20 103.6 68 63.2
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.4e-16 90.9 84 56.0
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.7e-15 87.4 116 44.8
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.7e-14 84.7 55 72.7
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.1e-13 82.0 62 67.7
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.7e-12 77.4 71 56.3
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 2.0e-07 61.2 44 72.7
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.5e-07 60.5 57 56.1
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 3.8e-06 57.0 103 39.8
HanXRQChr01g0029221 Helianthus annuus HOM05D003933 ORTHO05D227176 8.6e-06 55.8 42 66.7


User provided reference genes

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