Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g031740 Solanum pennellii HOM05D000132 ORTHO05D000058 5.1e-19 99.4 48 100.0
PGSC0003DMG401021514 Solanum tuberosum HOM05D000132 ORTHO05D000058 1.7e-14 84.3 47 83.0
PGSC0003DMG400017713 Solanum tuberosum HOM05D000132 ORTHO05D000058 2.1e-12 77.4 48 75.0
Solyc04g074050.4 Solanum lycopersicum HOM05D000132 ORTHO05D000058 2.7e-12 77.0 47 76.6
CAN.G1836.1 Capsicum annuum HOM05D000132 ORTHO05D000058 6.1e-12 75.9 48 75.0
CAN.G6043.1 Capsicum annuum HOM05D000132 ORTHO05D000058 6.1e-12 75.9 48 75.0
Sopen04g029240 Solanum pennellii HOM05D000132 ORTHO05D000058 7.9e-12 75.5 48 72.9
PGSC0003DMG401006401 Solanum tuberosum HOM05D000132 ORTHO05D000058 3.0e-11 73.6 47 72.3
PGSC0003DMG400027967 Solanum tuberosum HOM05D000132 ORTHO05D000058 3.9e-11 73.2 47 72.3
PGSC0003DMG400027971 Solanum tuberosum HOM05D000132 ORTHO05D000058 3.9e-11 73.2 47 72.3
Nitab4.5_0001816g0110 Nicotiana tabacum HOM05D000132 ORTHO05D000058 5.1e-11 72.8 47 74.5
CAN.G1522.8 Capsicum annuum HOM05D000132 ORTHO05D000058 6.7e-11 72.4 48 66.7
Nitab4.5_0001307g0030 Nicotiana tabacum HOM05D000132 ORTHO05D000058 1.1e-10 71.6 46 69.6
Peaxi162Scf00041g01422 Petunia axillaris HOM05D000132 ORTHO05D000058 1.1e-10 71.6 47 72.3
PGSC0003DMG400011989 Solanum tuberosum HOM05D000132 ORTHO05D000058 1.1e-10 71.6 47 72.3
PGSC0003DMG401023870 Solanum tuberosum HOM05D000132 ORTHO05D000058 1.1e-10 71.6 47 70.2
CAN.G101.34 Capsicum annuum HOM05D000132 ORTHO05D000058 1.5e-10 71.2 47 70.2
Nitab4.5_0000232g0270 Nicotiana tabacum HOM05D000132 ORTHO05D000058 1.5e-10 71.2 47 70.2
CAN.G101.32 Capsicum annuum HOM05D000132 ORTHO05D000058 3.3e-10 70.1 47 70.2
CAN.G193.27 Capsicum annuum HOM05D000132 ORTHO05D000058 3.3e-10 70.1 47 70.2
CAN.G2870.1 Capsicum annuum HOM05D000132 ORTHO05D000058 3.3e-10 70.1 47 70.2
Nitab4.5_0000232g0350 Nicotiana tabacum HOM05D000132 ORTHO05D000058 3.3e-10 70.1 47 70.2
Nitab4.5_0005157g0010 Nicotiana tabacum HOM05D000132 ORTHO05D000058 3.3e-10 70.1 47 74.5
Nitab4.5_0002757g0110 Nicotiana tabacum HOM05D000132 ORTHO05D000058 4.4e-10 69.7 47 70.2
Peaxi162Scf00168g01723 Petunia axillaris HOM05D000132 ORTHO05D000058 4.4e-10 69.7 47 68.1
Solyc04g074000.3 Solanum lycopersicum HOM05D000132 ORTHO05D000058 5.7e-10 69.3 47 70.2
Solyc04g074020.2 Solanum lycopersicum HOM05D000132 ORTHO05D000058 5.7e-10 69.3 47 70.2
Solyc04g074030.3 Solanum lycopersicum HOM05D000132 ORTHO05D000058 5.7e-10 69.3 47 70.2
PGSC0003DMG400023864 Solanum tuberosum HOM05D000053 ORTHO05D000035 7.4e-10 68.9 48 68.8
Nitab4.5_0006164g0070 Nicotiana tabacum HOM05D000053 ORTHO05D000058 9.7e-10 68.6 47 66.0
Nitab4.5_0002757g0070 Nicotiana tabacum HOM05D000053 ORTHO05D000035 1.3e-09 68.2 47 68.1
Peaxi162Scf00062g00928 Petunia axillaris HOM05D000053 ORTHO05D000035 1.7e-09 67.8 47 70.2
CAN.G575.72 Capsicum annuum HOM05D000053 ORTHO05D000058 2.2e-09 67.4 47 70.2
CAN.G793.60 Capsicum annuum HOM05D000053 ORTHO05D000035 2.2e-09 67.4 47 66.0
PGSC0003DMG400037551 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.2e-09 67.4 47 63.8
CAN.G575.124 Capsicum annuum HOM05D000053 ORTHO05D000058 2.8e-09 67.0 47 68.1
CAN.G517.2 Capsicum annuum HOM05D000132 ORTHO05D000058 3.7e-09 66.6 48 64.6
CAN.G866.28 Capsicum annuum HOM05D000132 ORTHO05D000058 3.7e-09 66.6 47 66.0
Nitab4.5_0006076g0010 Nicotiana tabacum HOM05D000132 ORTHO05D000058 3.7e-09 66.6 47 70.2
CAN.G575.104 Capsicum annuum HOM05D000033 ORTHO05D007915 4.8e-09 66.2 47 68.1
CAN.G575.67 Capsicum annuum HOM05D000053 ORTHO05D000058 6.3e-09 65.9 47 66.0
CAN.G575.84 Capsicum annuum HOM05D000132 ORTHO05D000058 1.1e-08 65.1 47 68.1
Solyc05g012430.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.4e-08 64.7 47 61.7
CAN.G575.74 Capsicum annuum HOM05D000053 ORTHO05D000035 1.8e-08 64.3 48 66.7
CAN.G767.21 Capsicum annuum HOM05D000053 ORTHO05D000058 1.8e-08 64.3 47 68.1
CAN.G1833.6 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-08 63.9 47 68.1
Eucgr.H00941 Eucalyptus grandis HOM05D000132 ORTHO05D000058 5.3e-08 62.8 47 63.8
Solyc12g099980.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 5.3e-08 62.8 47 61.7
Sopen12g034600 Solanum pennellii HOM05D000053 ORTHO05D000035 5.3e-08 62.8 47 61.7
CAN.G1768.1 Capsicum annuum HOM05D000053 ORTHO05D000058 7.0e-08 62.4 47 63.8
CAN.G2075.2 Capsicum annuum HOM05D000053 ORTHO05D000035 7.0e-08 62.4 47 63.8
CAN.G575.115 Capsicum annuum HOM05D000053 ORTHO05D000035 9.1e-08 62.0 47 66.0
Nitab4.5_0000014g0450 Nicotiana tabacum HOM05D000132 ORTHO05D000058 9.1e-08 62.0 46 63.0
Solyc06g008300.4 Solanum lycopersicum HOM05D000053 ORTHO05D000035 9.1e-08 62.0 47 66.0
Sopen12g023650 Solanum pennellii HOM05D000053 ORTHO05D000035 9.1e-08 62.0 47 63.8
CAN.G575.71 Capsicum annuum HOM05D000132 ORTHO05D000058 1.2e-07 61.6 47 63.8
Solyc12g049190.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.2e-07 61.6 46 63.0
CAN.G2844.1 Capsicum annuum HOM05D000132 ORTHO05D000058 1.5e-07 61.2 47 66.0
PGSC0003DMG400004722 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.5e-07 61.2 48 64.6
PGSC0003DMG400014719 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.5e-07 61.2 47 61.7
Solyc06g008270.2 Solanum lycopersicum HOM05D000053 ORTHO05D000035 2.0e-07 60.8 47 63.8
CAN.G575.121 Capsicum annuum HOM05D000002 ORTHO05D000001 2.6e-07 60.5 47 63.8
CAN.G575.86 Capsicum annuum HOM05D000132 ORTHO05D000058 2.6e-07 60.5 47 63.8
Solyc12g099870.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 2.6e-07 60.5 47 61.7
Sopen06g003130 Solanum pennellii HOM05D000053 ORTHO05D000035 2.6e-07 60.5 47 63.8
Sopen12g034500 Solanum pennellii HOM05D000053 ORTHO05D000035 2.6e-07 60.5 47 61.7
PGSC0003DMG401023866 Solanum tuberosum HOM05D000053 ORTHO05D000035 4.5e-07 59.7 47 57.4
CAN.G1579.25 Capsicum annuum HOM05D000053 ORTHO05D000035 1.0e-06 58.5 46 63.0
CAN.G941.13 Capsicum annuum HOM05D000053 ORTHO05D000035 1.0e-06 58.5 46 60.9
Dinv38634 Davidia involucrata HOM05D000071 ORTHO05D000058 1.0e-06 58.5 45 64.4
CAN.G1484.12 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-06 58.2 47 59.6
Cc00_g33160 Coffea canephora HOM05D000132 ORTHO05D000058 1.3e-06 58.2 47 63.8
Eucgr.F00311 Eucalyptus grandis HOM05D000132 ORTHO05D000058 1.3e-06 58.2 46 54.3
Eucgr.H02328 Eucalyptus grandis HOM05D000132 ORTHO05D000058 1.3e-06 58.2 47 53.2
CAN.G1816.6 Capsicum annuum HOM05D000235 ORTHO05D000035 1.7e-06 57.8 48 56.2
Cc00_g34440 Coffea canephora HOM05D000132 ORTHO05D000058 1.7e-06 57.8 47 61.7
Cc03_g08750 Coffea canephora HOM05D000132 ORTHO05D000058 1.7e-06 57.8 45 64.4
Dinv00834 Davidia involucrata HOM05D000132 ORTHO05D000058 1.7e-06 57.8 45 64.4
Dinv13019 Davidia involucrata HOM05D000132 ORTHO05D000058 1.7e-06 57.8 45 64.4
CAN.G1579.19 Capsicum annuum HOM05D000132 ORTHO05D000058 3.8e-06 56.6 46 60.9
Cc03_g08630 Coffea canephora HOM05D000132 ORTHO05D000058 3.8e-06 56.6 45 62.2
Dinv00835 Davidia involucrata HOM05D000132 ORTHO05D000058 3.8e-06 56.6 45 64.4
Eucgr.F00533 Eucalyptus grandis HOM05D000132 ORTHO05D000058 3.8e-06 56.6 44 61.4
Ciclev10027783m.g Citrus clementina HOM05D000132 ORTHO05D000058 5.0e-06 56.2 47 55.3
Cc10_g07280 Coffea canephora HOM05D000132 ORTHO05D000058 5.0e-06 56.2 45 60.0
Cc10_g07290 Coffea canephora HOM05D000132 ORTHO05D000058 5.0e-06 56.2 45 60.0
QL09p022166 Quercus lobata HOM05D000132 ORTHO05D000058 5.0e-06 56.2 45 62.2
GSVIVG01008434001 Vitis vinifera HOM05D000132 ORTHO05D000058 5.0e-06 56.2 47 55.3
Eucgr.H00942 Eucalyptus grandis HOM05D000132 ORTHO05D000058 6.5e-06 55.8 44 61.4
Prupe.2G064900 Prunus persica HOM05D000132 ORTHO05D000058 6.5e-06 55.8 45 57.8
Prupe.4G268100 Prunus persica HOM05D000132 ORTHO05D000058 6.5e-06 55.8 45 57.8
Sopen06g003150 Solanum pennellii HOM05D000053 ORTHO05D000035 6.5e-06 55.8 47 59.6
Cc00_g31790 Coffea canephora HOM05D000132 ORTHO05D000058 8.5e-06 55.5 47 59.6
Prupe.4G129000 Prunus persica HOM05D000132 ORTHO05D000058 8.5e-06 55.5 44 59.1
PGSC0003DMG400024447 Solanum tuberosum HOM05D000132 ORTHO05D000058 8.5e-06 55.5 47 57.4
vmacro04746 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 8.5e-06 55.5 42 66.7


User provided reference genes

Program Settings