Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g031650 Solanum pennellii HOM05D006069 ORTHO05D008101 1.4e-60 236.1 117 100.0
Solyc04g078060.1 Solanum lycopersicum HOM05D006069 ORTHO05D008101 3.3e-59 231.5 117 98.3
PGSC0003DMG400021511 Solanum tuberosum HOM05D006069 ORTHO05D008101 1.1e-57 226.5 117 96.6
Nitab4.5_0000934g0080 Nicotiana tabacum HOM05D006069 ORTHO05D008101 3.7e-42 174.9 121 78.5
Hma1.2p1_0733F.1_g210300 Hydrangea macrophylla HOM05D006069 ORTHO05D008101 9.8e-35 150.2 115 69.6
Nitab4.5_0003228g0030 Nicotiana tabacum HOM05D006069 ORTHO05D008101 1.4e-33 146.4 106 77.4
Actinidia15431 Actinidia chinensis HOM05D006069 ORTHO05D008101 9.2e-33 143.7 115 67.0
Oeu014170.1 Olea europaea HOM05D006069 ORTHO05D008101 1.2e-32 143.3 114 68.4
CSS0019530 Camellia sinensis var. sinensis HOM05D006069 ORTHO05D008101 1.6e-32 142.9 115 61.7
SalBow7G4587 Salvia bowleyana HOM05D006069 ORTHO05D008101 2.7e-32 142.1 114 63.2
Oeu061972.1 Olea europaea HOM05D006069 ORTHO05D008101 5.9e-32 141.0 114 66.7
Actinidia16995 Actinidia chinensis HOM05D006069 ORTHO05D006669 7.8e-32 140.6 115 66.1
Migut.N03168 Erythranthe guttata HOM05D006069 ORTHO05D008101 1.0e-31 140.2 113 63.7
Sabra02G0016400 Salix brachista HOM05D006069 ORTHO05D008101 1.0e-31 140.2 113 63.7
Nitab4.5_0000569g0030 Nicotiana tabacum HOM05D006069 ORTHO05D008101 2.3e-31 139.0 114 66.7
Oeu054481.1 Olea europaea HOM05D006069 ORTHO05D008101 2.9e-31 138.7 114 63.2
Peaxi162Scf00081g00135 Petunia axillaris HOM05D002628 ORTHO05D008101 2.9e-31 138.7 105 71.4
PGSC0003DMG400011549 Solanum tuberosum HOM05D006069 ORTHO05D008101 2.9e-31 138.7 116 63.8
SGA_v2.0_scaffold11G05937 Striga asiatica HOM05D006069 ORTHO05D008101 2.9e-31 138.7 114 61.4
Cfa013967 Carpinus fangiana HOM05D006069 ORTHO05D008101 3.8e-31 138.3 115 62.6
SalBow8G0098 Salvia bowleyana HOM05D006069 ORTHO05D008101 3.8e-31 138.3 117 61.5
TAR625G1525 Trochodendron aralioides HOM05D006069 ORTHO05D008101 5.0e-31 137.9 112 67.0
Haze_22649 Corylus avellana HOM05D006069 ORTHO05D008101 8.6e-31 137.1 115 61.7
Haze_22650 Corylus avellana HOM05D003905 ORTHO05D005329 1.1e-30 136.7 115 61.7
Sc02g0008640 Simmondsia chinensis HOM05D006069 ORTHO05D008101 1.9e-30 136.0 115 62.6
VMungo0647G0980 Vigna mungo HOM05D006069 ORTHO05D008101 1.9e-30 136.0 115 61.7
Sopen12g030410 Solanum pennellii HOM05D006069 ORTHO05D008101 2.5e-30 135.6 117 63.2
Potri.002G020200 Populus trichocarpa HOM05D006069 ORTHO05D008101 3.3e-30 135.2 112 63.4
Ciclev10002907m.g Citrus clementina HOM05D006069 ORTHO05D008101 4.3e-30 134.8 115 60.0
Nn6g32021 Nelumbo nucifera HOM05D006069 ORTHO05D008101 4.3e-30 134.8 115 62.6
unitig_82.g27107 Utricularia gibba HOM05D006069 ORTHO05D008101 4.3e-30 134.8 113 60.2
DCAR_016725 Daucus carota HOM05D006069 ORTHO05D008101 5.6e-30 134.4 116 59.5
COL.COLO4_26120 Corchorus olitorius HOM05D006069 ORTHO05D008101 7.3e-30 134.0 117 59.8
Lsat_1_v5_gn_0_33081 Lactuca sativa HOM05D006069 ORTHO05D008101 7.3e-30 134.0 112 63.4
Lalb_Chr19g0131451 Lupinus albus HOM05D006069 ORTHO05D008101 1.2e-29 133.3 115 60.9
Phvul.001G005300 Phaseolus vulgaris HOM05D006069 ORTHO05D008101 1.2e-29 133.3 115 60.9
Atru.chr13.270 Acer truncatum HOM05D006069 ORTHO05D008101 1.6e-29 132.9 112 58.9
CiPaw.07G148400 Carya illinoinensis HOM05D006069 ORTHO05D008101 1.6e-29 132.9 115 60.0
Dinv31861 Davidia involucrata HOM05D006069 ORTHO05D000038 1.6e-29 132.9 115 64.3
Thecc.08G047500 Theobroma cacao HOM05D006069 ORTHO05D008101 1.6e-29 132.9 115 60.9
CANSAT25G1864 Cannabis sativa HOM05D006069 ORTHO05D008101 2.1e-29 132.5 115 57.4
Glyma.14G219800 Glycine max HOM05D006069 ORTHO05D008101 2.1e-29 132.5 118 58.5
EL10Ac1g02174 Beta vulgaris HOM05D006069 ORTHO05D008101 2.8e-29 132.1 115 60.0
Cfa013969 Carpinus fangiana HOM05D006069 ORTHO05D008101 2.8e-29 132.1 115 60.0
Nitab4.5_0007809g0010 Nicotiana tabacum HOM05D006069 ORTHO05D008101 2.8e-29 132.1 113 64.6
Duzib041G0459 Durio zibethinus HOM05D006069 ORTHO05D008101 4.7e-29 131.3 115 59.1
Gohir.D05G258200 Gossypium hirsutum HOM05D006069 ORTHO05D008101 6.1e-29 131.0 115 60.0
Gorai.009G269500 Gossypium raimondii HOM05D006069 ORTHO05D008101 6.1e-29 131.0 115 60.0
Cpa.g.c46170 Carica papaya HOM05D006069 ORTHO05D008101 8.0e-29 130.6 115 57.4
Cpa.g.sc64.165 Carica papaya HOM05D006069 ORTHO05D008101 8.0e-29 130.6 115 57.4
Gohir.A05G256400 Gossypium hirsutum HOM05D006069 ORTHO05D008101 1.8e-28 129.4 115 59.1
Manes.18G012400 Manihot esculenta HOM05D006069 ORTHO05D008101 1.8e-28 129.4 113 60.2
Eucgr.H00971 Eucalyptus grandis HOM05D006069 ORTHO05D008101 2.3e-28 129.0 115 57.4
Sc15g0004900 Simmondsia chinensis HOM05D006069 ORTHO05D008101 2.3e-28 129.0 114 58.8
TWI56G0900 Tripterygium wilfordii HOM05D006069 ORTHO05D008101 2.3e-28 129.0 112 58.9
Duzib093G2212 Durio zibethinus HOM05D006069 ORTHO05D008101 3.0e-28 128.6 116 59.5
Potri.005G241200 Populus trichocarpa HOM05D006069 ORTHO05D008101 3.0e-28 128.6 113 58.4
HanXRQChr13g0387231 Helianthus annuus HOM05D006069 ORTHO05D008101 4.0e-28 128.3 112 62.5
QL02p011928 Quercus lobata HOM05D006069 ORTHO05D008101 4.0e-28 128.3 115 58.3
QL11p034297 Quercus lobata HOM05D006069 ORTHO05D008101 4.0e-28 128.3 115 58.3
AUR62041483 Chenopodium quinoa HOM05D006069 ORTHO05D008101 5.2e-28 127.9 115 60.0
Lalb_Chr03g0033431 Lupinus albus HOM05D006069 ORTHO05D008101 5.2e-28 127.9 115 57.4
DCAR_013877 Daucus carota HOM05D006069 ORTHO05D000038 6.8e-28 127.5 113 61.1
Lsat_1_v5_gn_8_29900 Lactuca sativa HOM05D006069 ORTHO05D008101 6.8e-28 127.5 112 60.7
PGR031G1000 Punica granatum HOM05D006069 ORTHO05D008101 6.8e-28 127.5 111 57.7
unitig_747.g21531 Utricularia gibba HOM05D006069 ORTHO05D008101 6.8e-28 127.5 112 60.7
Ca_00837_v3 Cicer arietinum L. HOM05D006069 ORTHO05D008101 8.9e-28 127.1 111 56.8
AT1G75810 Arabidopsis thaliana HOM05D006069 ORTHO05D008101 1.2e-27 126.7 118 53.4
Migut.C00852 Erythranthe guttata HOM05D006069 ORTHO05D008101 1.2e-27 126.7 105 62.9
Lalb_Chr01g0008621 Lupinus albus HOM05D006069 ORTHO05D008101 1.2e-27 126.7 115 58.3
Ah.00g000260 Amaranthus hybridus HOM05D006069 ORTHO05D008101 1.5e-27 126.3 115 55.7
arahy.Tifrunner.gnm1.ann1.LEZM1J Arachis hypogaea HOM05D006069 ORTHO05D008101 1.5e-27 126.3 116 58.6
FvH4_2g38290 Fragaria vesca HOM05D006069 ORTHO05D008101 1.5e-27 126.3 112 58.0
AL2G35800 Arabidopsis lyrata HOM05D006069 ORTHO05D008101 2.0e-27 125.9 118 53.4
Aa31LG4G6010 Aethionema arabicum HOM05D006069 ORTHO05D008101 2.6e-27 125.6 115 52.2
FAN27G3260 Fragaria x ananassa HOM05D006069 ORTHO05D008101 5.8e-27 124.4 112 57.1
Gohir.A06G002300 Gossypium hirsutum HOM05D006069 ORTHO05D008101 5.8e-27 124.4 115 57.4
Gohir.D06G005300 Gossypium hirsutum HOM05D006069 ORTHO05D008101 7.5e-27 124.0 115 57.4
Gorai.010G002500 Gossypium raimondii HOM05D006069 ORTHO05D008101 7.5e-27 124.0 115 57.4
FAN15G3329 Fragaria x ananassa HOM05D006069 ORTHO05D008101 1.3e-26 123.2 112 56.2
Sabra05G0186700 Salix brachista HOM05D006069 ORTHO05D008101 1.3e-26 123.2 113 57.5
RcHm_v2.0_Chr6g0303091 Rosa chinensis HOM05D006069 ORTHO05D008101 2.2e-26 122.5 114 57.0
Medtr3g113620 Medicago truncatula HOM05D006069 ORTHO05D008101 2.9e-26 122.1 112 55.4
TWI12G0868 Tripterygium wilfordii HOM05D006069 ORTHO05D008101 2.9e-26 122.1 112 57.1
BcaC03g15627 Brassica carinata HOM05D006069 ORTHO05D008101 4.9e-26 121.3 118 51.7
THA.LOC104811416 Tarenaya hassleriana HOM05D006069 ORTHO05D008101 4.9e-26 121.3 115 53.0
Manes.05G145900 Manihot esculenta HOM05D006069 ORTHO05D008101 6.4e-26 120.9 105 60.0
C02p33660 Brassica napus HOM05D006069 ORTHO05D008101 8.3e-26 120.6 118 51.7
BolC2t09338H Brassica oleracea HOM05D006069 ORTHO05D008101 8.3e-26 120.6 118 51.7
BraA02t07058Z Brassica rapa HOM05D006069 ORTHO05D008101 8.3e-26 120.6 118 51.7
SGA_v2.0_scaffold47G17498 Striga asiatica HOM05D006069 ORTHO05D008101 1.1e-25 120.2 111 57.7
Thhalv10019558m.g Eutrema salsugineum HOM05D006069 ORTHO05D008101 1.4e-25 119.8 116 51.7
MD08G1011100 Malus domestica HOM05D006069 ORTHO05D008101 1.4e-25 119.8 112 56.2
Sp5g30930 Schrenkiella parvula HOM05D006069 ORTHO05D008101 1.4e-25 119.8 116 51.7
BcaB05g24944 Brassica carinata HOM05D006069 ORTHO05D008101 3.2e-25 118.6 121 48.8
THA.LOC104805018 Tarenaya hassleriana HOM05D006069 ORTHO05D008101 9.2e-25 117.1 115 51.3
A02p20240 Brassica napus HOM05D006069 ORTHO05D008101 1.6e-24 116.3 118 50.0
Duzib116G0547 Durio zibethinus HOM05D006069 ORTHO05D008101 1.6e-24 116.3 106 57.5
BcaC08g47069 Brassica carinata HOM05D006069 ORTHO05D008101 2.0e-24 115.9 116 49.1
MD15G1011100 Malus domestica HOM05D006069 ORTHO05D008101 2.0e-24 115.9 112 57.1
Psat0s2878g0120 Pisum sativum HOM05D006069 ORTHO05D008101 2.0e-24 115.9 113 53.1
Carub.0002s2266 Capsella rubella HOM05D006069 ORTHO05D008101 3.5e-24 115.2 122 50.8
Rhsim06G0020100 Rhododendron simsii HOM05D006069 ORTHO05D008101 4.6e-24 114.8 102 57.8
Prupe.1G363800 Prunus persica HOM05D006069 ORTHO05D008101 3.0e-23 112.1 111 53.2
Aqoxy5G01811 Aquilegia oxysepala HOM05D006069 ORTHO05D008101 5.0e-23 111.3 111 55.0
Glyma.17G258800 Glycine max HOM05D006069 ORTHO05D008101 6.6e-23 110.9 107 54.2
Psat6g002280 Pisum sativum HOM05D006069 ORTHO05D008101 6.6e-23 110.9 115 48.7
VMungo1309G1320 Vigna mungo HOM05D006069 ORTHO05D008101 1.1e-22 110.2 115 51.3
CARHR069230 Cardamine hirsuta HOM05D006069 ORTHO05D008101 1.5e-22 109.8 117 49.6
Medtr1g025490 Medicago truncatula HOM05D006069 ORTHO05D008101 1.5e-22 109.8 115 46.1
arahy.Tifrunner.gnm1.ann1.Q2AYB8 Arachis hypogaea HOM05D006069 ORTHO05D008101 5.6e-22 107.8 114 51.8
BcaC08g47325 Brassica carinata HOM05D006069 ORTHO05D008101 7.3e-22 107.5 118 45.8
BolC6t40015H Brassica oleracea HOM05D006069 ORTHO05D008101 7.3e-22 107.5 118 45.8
ECA233G2757 Erigeron canadensis HOM05D006069 ORTHO05D008101 9.5e-22 107.1 99 54.5
C06p49760 Brassica napus HOM05D006069 ORTHO05D008101 1.6e-21 106.3 115 47.0
Glyma.06G023700 Glycine max HOM05D006069 ORTHO05D008101 1.6e-21 106.3 115 49.6
arahy.Tifrunner.gnm1.ann1.KJD857 Arachis hypogaea HOM05D006069 ORTHO05D008101 2.8e-21 105.5 114 51.8
PSO700G0183 Papaver somniferum HOM05D006069 ORTHO05D008101 1.1e-20 103.6 118 46.6
Lalb_Chr23g0266111 Lupinus albus HOM05D006069 ORTHO05D008101 2.3e-20 102.4 115 47.8
Lalb_Chr11g0061821 Lupinus albus HOM05D006069 ORTHO05D008101 4.0e-20 101.7 115 44.3
Phvul.009G017800 Phaseolus vulgaris HOM05D006069 ORTHO05D008101 4.0e-20 101.7 105 53.3
PSO170G3064 Papaver somniferum HOM05D006069 ORTHO05D008101 6.8e-20 100.9 114 48.2
BcaC08g47066 Brassica carinata HOM05D006069 ORTHO05D008101 1.2e-19 100.1 115 44.3
Peaxi162Scf00160g00114 Petunia axillaris HOM05D006069 ORTHO05D008101 2.2e-18 95.9 112 51.8
AUR62040543 Chenopodium quinoa HOM05D006069 ORTHO05D009490 1.0e-15 87.0 68 70.6
Dinv26438 Davidia involucrata HOM05D006069 ORTHO05D008101 1.5e-14 83.2 89 55.1
SalBow6G6594 Salvia bowleyana HOM05D006069 ORTHO05D008101 4.1e-09 65.1 56 62.5
SalBow6G5718 Salvia bowleyana HOM05D006069 ORTHO05D008101 7.8e-08 60.8 55 61.8
A07p41340 Brassica napus HOM05D006069 ORTHO05D032697 8.6e-07 57.4 60 46.7


User provided reference genes

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