Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.1e-209 733.0 361 100.0
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 9.2e-209 729.9 361 99.4
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.4e-201 706.1 359 96.1
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 4.8e-173 611.3 363 86.5
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 4.1e-172 608.2 362 85.1
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 6.1e-168 594.3 363 83.7
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.4e-151 540.0 370 77.6
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 4.4e-94 349.0 374 53.7
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.5e-91 339.3 376 51.6
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 4.6e-91 339.0 368 53.0
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 7.8e-91 338.2 374 51.9
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 3.0e-90 336.3 359 51.5
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 6.6e-90 335.1 365 52.9
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.5e-89 334.0 375 53.9
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.2e-88 330.9 361 52.6
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 1.1e-87 327.8 363 51.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 2.4e-87 326.6 387 50.1
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.5e-86 323.9 363 51.5
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.4e-84 316.6 385 50.1
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 3.2e-84 316.2 386 49.7
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 7.1e-84 315.1 386 48.7
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 9.3e-84 314.7 385 48.8
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.2e-83 314.3 372 51.6
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.2e-83 314.3 372 51.6
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.2e-83 314.3 384 49.2
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 4.6e-83 312.4 381 48.3
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 4.6e-83 312.4 353 51.0
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 6.0e-83 312.0 361 50.4
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.3e-82 310.8 384 49.5
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.7e-82 310.5 368 47.3
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.9e-82 309.3 379 49.1
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 2.5e-81 306.6 384 49.0
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 2.8e-80 303.1 374 48.7
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 2.8e-80 303.1 371 50.9
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 3.6e-80 302.8 392 48.0
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 4.8e-80 302.4 382 48.4
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 6.2e-80 302.0 356 52.2
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.4e-79 300.8 379 49.9
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.8e-79 300.4 367 49.3
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.8e-79 300.4 371 49.6
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.4e-79 300.1 373 47.5
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 5.3e-79 298.9 383 48.0
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.6e-78 296.6 371 49.3
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 2.9e-77 293.1 333 51.4
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 3.8e-77 292.7 362 50.6
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 8.4e-77 291.6 374 46.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.4e-76 290.0 373 47.7
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 5.4e-76 288.9 374 47.9
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.6e-75 287.3 385 45.5
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 2.1e-75 287.0 367 47.7
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.0e-74 284.6 370 47.3
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.3e-74 284.3 383 46.2
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 3.0e-74 283.1 363 47.1
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.9e-74 282.7 355 47.9
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 3.9e-74 282.7 381 45.4
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 9.0e-71 271.6 349 48.4
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.2e-70 271.2 380 45.5
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.5e-70 270.8 364 45.6
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 2.0e-70 270.4 360 47.2
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 4.5e-70 269.2 358 46.6
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.3e-69 267.7 363 45.2
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.7e-69 267.3 372 45.4
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.1e-68 264.6 364 45.6
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.4e-68 263.5 364 46.7
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 5.5e-68 262.3 355 45.6
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 6.0e-67 258.8 382 42.1
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.8e-66 257.3 358 44.7
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 3.9e-66 256.1 384 43.2
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.1e-65 254.6 389 42.2
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.5e-65 254.2 363 43.3
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 7.4e-65 251.9 364 45.3
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.8e-64 250.0 387 42.9
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 3.7e-64 249.6 380 44.2
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 2.4e-63 246.9 378 42.9
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.2e-62 244.6 356 43.8
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.2e-62 244.6 360 43.6
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.2e-62 244.6 370 43.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.5e-62 244.2 363 44.6
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 2.0e-62 243.8 362 43.4
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 3.4e-62 243.0 437 40.0
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 4.5e-62 242.7 350 44.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 5.8e-62 242.3 363 44.4
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 5.8e-62 242.3 363 44.4
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 7.6e-62 241.9 440 39.1
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.0e-61 241.5 361 44.0
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.3e-61 241.1 352 44.9
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.7e-61 240.7 363 44.4
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 2.2e-61 240.4 339 44.8
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.9e-61 240.0 363 44.1
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 3.8e-61 239.6 364 43.1
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 2.1e-59 233.8 374 41.4
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 3.0e-58 229.9 423 39.2
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 8.7e-58 228.4 366 44.0
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 2.1e-56 223.8 388 41.2
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.1e-55 221.5 342 42.7
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 4.1e-55 219.5 373 39.9
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 4.1e-55 219.5 356 41.6
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.2e-54 218.0 362 42.3
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 3.4e-54 216.5 206 53.4
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.6e-51 207.6 263 46.0
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 6.1e-51 205.7 332 41.3
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 3.0e-50 203.4 363 39.7
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.1e-49 201.4 244 48.4
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.5e-49 201.1 243 48.1
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.8e-48 196.8 358 40.5
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 4.8e-48 196.1 366 38.8
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 6.9e-47 192.2 341 42.2
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 5.0e-45 186.0 362 40.1
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 6.5e-45 185.7 365 38.6
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 1.1e-44 184.9 200 53.0
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 7.2e-44 182.2 203 51.7
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 4.6e-43 179.5 293 42.0
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.5e-41 174.5 181 50.8
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 2.6e-41 173.7 197 51.3
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 4.4e-41 172.9 368 36.7
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.4e-39 167.9 358 37.4
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 6.9e-39 165.6 351 37.3
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 3.4e-38 163.3 360 38.1
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 4.5e-38 162.9 197 49.7
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.3e-37 161.4 355 34.6
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 9.4e-36 155.2 355 33.8
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.2e-35 154.8 280 39.3
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 6.1e-35 152.5 121 59.5
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 3.7e-32 143.3 301 36.9
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.0e-26 125.2 123 58.5
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-23 115.2 229 38.9
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 3.8e-21 106.7 107 57.0
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.2e-20 103.2 151 39.1
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 7.2e-20 102.4 151 38.4
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 8.8e-18 95.5 87 59.8
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 2.0e-17 94.4 344 32.0
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 8.6e-13 79.0 139 38.1
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.5e-12 78.2 165 32.1
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 3.6e-11 73.6 350 26.0
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.4e-10 71.6 166 31.9
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.0e-10 70.1 165 30.3
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 8.8e-10 68.9 90 44.4
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.7e-08 64.7 165 29.1
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 3.1e-07 60.5 163 29.4
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 3.1e-07 60.5 163 29.4
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 3.1e-07 60.5 163 29.4
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 3.1e-07 60.5 163 29.4
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 3.1e-07 60.5 163 29.4
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 7.0e-07 59.3 69 52.2
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 7.0e-07 59.3 163 28.2
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 9.2e-07 58.9 141 30.5


User provided reference genes

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