Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 4.7e-61 237.7 118 100.0
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 2.3e-55 218.8 116 94.8
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 1.1e-54 216.5 116 94.8
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 2.1e-40 169.1 116 81.0
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 1.6e-37 159.5 115 76.5
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 3.1e-36 155.2 99 77.8
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 2.5e-30 135.6 111 65.8
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 6.9e-28 127.5 112 58.0
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 1.5e-27 126.3 85 69.4
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 5.8e-27 124.4 111 63.1
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 5.8e-27 124.4 114 62.3
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 1.3e-26 123.2 112 59.8
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 2.2e-26 122.5 91 65.9
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 2.9e-26 122.1 119 60.5
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 3.8e-26 121.7 114 55.3
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 8.4e-26 120.6 114 62.3
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 8.4e-26 120.6 88 63.6
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.1e-25 120.2 110 58.2
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.1e-25 120.2 110 58.2
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.1e-25 120.2 110 58.2
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 1.4e-25 119.8 86 65.1
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 1.4e-25 119.8 112 58.0
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.4e-25 119.8 112 58.9
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.4e-25 119.8 112 58.0
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 1.9e-25 119.4 111 62.2
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 5.4e-25 117.9 81 67.9
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 7.1e-25 117.5 112 58.0
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 1.6e-24 116.3 119 54.6
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 2.1e-24 115.9 116 56.0
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.1e-24 115.9 112 59.8
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 2.7e-24 115.5 86 65.1
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.7e-24 115.5 100 61.0
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 3.5e-24 115.2 113 58.4
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 1.0e-23 113.6 110 59.1
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 1.0e-23 113.6 113 57.5
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 1.0e-23 113.6 113 54.0
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 1.7e-23 112.8 87 66.7
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 2.3e-23 112.5 88 61.4
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 3.9e-23 111.7 111 57.7
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 3.9e-23 111.7 111 54.1
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 6.6e-23 110.9 112 57.1
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 8.7e-23 110.5 111 53.2
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 8.7e-23 110.5 106 58.5
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 8.7e-23 110.5 111 58.6
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 8.7e-23 110.5 105 55.2
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 1.1e-22 110.2 83 71.1
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 1.5e-22 109.8 114 55.3
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 1.5e-22 109.8 112 54.5
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 7.3e-22 107.5 91 62.6
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 9.6e-22 107.1 93 59.1
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 9.6e-22 107.1 106 59.4
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 2.1e-21 105.9 97 61.9
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 2.8e-21 105.5 72 65.3
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 3.6e-21 105.1 121 50.4
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 3.6e-21 105.1 108 53.7
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 8.1e-21 104.0 115 53.9
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 1.4e-20 103.2 120 50.0
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 2.4e-20 102.4 115 56.5
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 6.9e-20 100.9 109 53.2
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 9.0e-20 100.5 115 46.1
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 9.0e-20 100.5 117 51.3
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 9.0e-20 100.5 88 58.0
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 2.0e-19 99.4 87 58.6
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 5.8e-19 97.8 114 44.7
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 5.8e-19 97.8 88 60.2
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 7.6e-19 97.4 88 58.0
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 7.6e-19 97.4 102 53.9
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 7.6e-19 97.4 115 44.3
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.3e-18 96.7 112 52.7
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 2.2e-18 95.9 68 61.8
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 2.9e-18 95.5 117 45.3
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.8e-18 95.1 76 59.2
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.4e-17 93.2 76 57.9
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.9e-17 92.8 91 51.6
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 2.4e-17 92.4 86 52.3
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 3.2e-17 92.0 93 48.4
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 1.2e-16 90.1 94 52.1
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 2.7e-16 89.0 115 49.6
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 2.7e-16 89.0 114 47.4
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 1.0e-15 87.0 116 49.1
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 4.3e-14 81.6 110 43.6
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 1.6e-13 79.7 94 46.8
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 2.1e-13 79.3 69 58.0
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 4.8e-13 78.2 112 43.8
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 5.8e-11 71.2 88 47.7
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 2.2e-10 69.3 83 51.8
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 4.9e-10 68.2 88 47.7
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.9e-09 66.2 71 47.9
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 3.5e-08 62.0 89 38.2
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 3.5e-08 62.0 73 47.9
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 6.0e-08 61.2 60 45.0
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 6.0e-08 61.2 68 48.5
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 7.9e-08 60.8 64 50.0
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.3e-07 60.1 73 42.5
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.8e-07 59.7 55 50.9
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.9e-07 58.5 61 49.2
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 3.9e-07 58.5 64 48.4
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 3.9e-07 58.5 48 54.2
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.1e-07 58.2 64 48.4
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 5.1e-07 58.2 91 34.1
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 5.1e-07 58.2 50 58.0
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 5.1e-07 58.2 86 39.5
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 6.7e-07 57.8 61 49.2
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 6.7e-07 57.8 61 49.2
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.1e-06 57.0 43 55.8
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 1.1e-06 57.0 85 40.0
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.5e-06 56.6 64 46.9
FvH4_1g18110 Fragaria vesca HOM05D020383 ORTHO05D022607 1.5e-06 56.6 74 40.5
FAN19G0205 Fragaria x ananassa HOM05D020383 ORTHO05D022607 1.5e-06 56.6 74 40.5
FAN26G0269 Fragaria x ananassa HOM05D020383 ORTHO05D022607 1.5e-06 56.6 74 41.9
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.5e-06 56.6 65 41.5
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.9e-06 56.2 62 43.5
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.9e-06 56.2 53 45.3
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.5e-06 55.8 64 40.6
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 2.5e-06 55.8 52 46.2
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.5e-06 55.8 67 44.8
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.5e-06 55.8 48 56.2
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 2.5e-06 55.8 50 52.0
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.5e-06 55.8 54 46.3
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.5e-06 55.8 61 45.9
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 2.5e-06 55.8 53 45.3
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 2.5e-06 55.8 53 45.3
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.5e-06 55.8 53 45.3
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.5e-06 55.8 48 54.2
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 3.3e-06 55.5 70 41.4
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.3e-06 55.5 56 44.6
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 3.3e-06 55.5 48 52.1
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.3e-06 55.5 48 54.2
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.3e-06 55.1 60 50.0
RcHm_v2.0_Chr2g0108601 Rosa chinensis HOM05D020383 ORTHO05D022607 4.3e-06 55.1 89 42.7
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 5.6e-06 54.7 53 54.7
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 5.6e-06 54.7 54 50.0
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 5.6e-06 54.7 68 44.1
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.4e-06 54.3 49 49.0
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 7.4e-06 54.3 58 48.3
Os03g0675500 Oryza sativa ssp. japonica HOM05D007433 ORTHO05D003347 7.4e-06 54.3 64 43.8
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 9.6e-06 53.9 94 35.1
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 9.6e-06 53.9 81 40.7
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 9.6e-06 53.9 68 44.1
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 9.6e-06 53.9 57 40.4


User provided reference genes

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