Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 1.3e-112 409.8 215 100.0
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 1.0e-109 400.2 215 98.1
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 2.6e-102 375.6 213 91.5
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.3e-85 320.1 213 81.7
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 2.1e-83 312.8 193 82.9
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 2.1e-83 312.8 215 76.3
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 4.7e-83 311.6 214 76.6
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 1.8e-82 309.7 215 74.4
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 1.5e-81 306.6 214 74.3
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 5.7e-81 304.7 216 74.5
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 1.3e-80 303.5 214 73.8
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 1.3e-80 303.5 238 68.5
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 2.2e-80 302.8 212 75.0
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 6.3e-80 301.2 214 72.9
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 8.2e-80 300.8 216 74.1
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.4e-79 300.1 216 74.1
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.8e-79 299.7 220 72.3
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 3.1e-79 298.9 214 73.8
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 4.1e-79 298.5 214 73.8
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 9.1e-79 297.4 212 73.6
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 1.2e-78 297.0 220 71.8
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.2e-78 297.0 214 73.8
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 1.6e-78 296.6 214 73.8
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 3.5e-78 295.4 218 71.1
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 4.5e-78 295.0 208 74.0
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 4.5e-78 295.0 216 71.3
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 5.9e-78 294.7 240 67.5
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 5.9e-78 294.7 215 71.2
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 7.7e-78 294.3 219 71.2
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.0e-77 293.9 215 73.0
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 2.2e-77 292.7 213 70.0
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 2.9e-77 292.4 224 70.5
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 3.8e-77 292.0 215 68.4
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 6.5e-77 291.2 216 71.8
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 8.5e-77 290.8 215 70.7
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 1.1e-76 290.4 218 70.6
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 3.2e-76 288.9 218 72.0
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 4.2e-76 288.5 216 70.4
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 4.2e-76 288.5 213 74.2
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 5.5e-76 288.1 215 71.2
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 5.5e-76 288.1 217 70.5
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 9.4e-76 287.3 218 70.2
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 1.2e-75 287.0 214 69.6
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.6e-75 286.6 218 69.7
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 2.7e-75 285.8 218 68.3
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 6.1e-75 284.6 213 68.5
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 8.0e-75 284.3 193 74.1
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 1.4e-74 283.5 218 68.8
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 1.4e-74 283.5 215 71.2
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 1.8e-74 283.1 224 67.4
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 1.2e-73 280.4 212 70.8
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 2.0e-73 279.6 189 77.2
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 2.6e-73 279.3 214 69.2
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 2.6e-73 279.3 211 70.1
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 5.7e-73 278.1 209 69.4
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 7.5e-73 277.7 209 69.9
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 9.8e-73 277.3 211 69.7
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 1.3e-72 276.9 219 67.6
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 2.2e-72 276.2 214 66.8
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 2.8e-72 275.8 212 68.9
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 8.3e-72 274.2 217 66.4
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.1e-71 273.9 219 67.1
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 1.4e-71 273.5 211 68.7
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 2.4e-71 272.7 181 78.5
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 2.4e-71 272.7 215 68.4
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 3.1e-71 272.3 218 66.5
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 1.0e-69 267.3 214 65.4
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.3e-69 266.9 211 66.4
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 3.2e-68 262.3 167 80.2
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 5.5e-68 261.5 229 61.6
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 5.5e-68 261.5 183 72.1
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 4.7e-67 258.5 217 64.5
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 6.1e-67 258.1 214 65.4
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 1.0e-66 257.3 217 63.6
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 1.0e-66 257.3 212 63.2
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 6.8e-66 254.6 214 64.5
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 1.2e-65 253.8 167 76.6
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 1.3e-64 250.4 171 74.9
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 1.7e-64 250.0 213 60.6
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 3.7e-64 248.8 170 74.1
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 4.9e-64 248.4 155 82.6
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 8.3e-64 247.7 167 74.9
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 2.4e-63 246.1 193 66.8
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.2e-62 243.8 213 66.2
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 2.6e-57 226.1 151 79.5
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 2.2e-56 223.0 227 55.9
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 5.4e-55 218.4 219 53.9
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 2.7e-54 216.1 138 78.3
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 4.9e-48 195.3 141 69.5
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.3e-45 186.4 153 66.0
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 8.1e-43 177.9 138 71.0
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 8.1e-43 177.9 138 70.3
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 9.8e-41 171.0 136 64.0
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 8.1e-27 124.8 95 68.4
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.2e-25 120.9 83 77.1
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.2e-25 120.9 83 77.1
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 1.6e-22 110.5 188 36.7
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 1.0e-21 107.8 65 81.5
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 5.6e-20 102.1 59 83.1
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 5.4e-15 85.5 215 34.0
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 1.6e-14 84.0 73 47.9
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 2.1e-14 83.6 153 39.2
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.5e-12 77.4 76 56.6
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.5e-07 58.9 42 69.0


User provided reference genes

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