Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 6.8e-120 434.1 233 100.0
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 3.4e-119 431.8 233 99.6
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 1.7e-107 392.9 234 92.3
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 2.0e-103 379.4 233 88.0
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 2.0e-95 352.8 235 80.0
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 4.0e-88 328.6 188 88.8
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.6e-81 306.6 217 73.7
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 3.6e-81 305.4 238 67.6
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 4.7e-81 305.1 234 69.2
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 8.1e-81 304.3 241 68.0
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 1.1e-80 303.9 229 69.4
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.8e-80 303.1 235 67.2
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 4.0e-80 302.0 228 68.9
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.2e-79 300.4 235 66.4
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.5e-79 300.1 232 68.1
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 2.6e-79 299.3 237 66.7
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 7.6e-79 297.7 237 66.2
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 7.6e-79 297.7 233 68.2
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 7.6e-79 297.7 233 68.2
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 9.9e-79 297.4 235 67.7
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 1.1e-77 293.9 228 73.2
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.1e-77 293.9 178 90.4
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.4e-77 292.7 233 67.4
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 3.2e-77 292.4 217 67.7
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 6.0e-76 288.1 238 69.3
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 6.0e-76 288.1 222 67.1
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 7.8e-76 287.7 228 65.8
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 1.0e-75 287.3 228 71.1
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 1.3e-75 287.0 229 66.4
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.7e-75 286.6 236 69.9
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 6.6e-75 284.6 227 71.8
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 6.6e-75 284.6 235 65.1
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.5e-74 282.7 233 65.2
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 2.5e-74 282.7 238 67.6
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 1.2e-73 280.4 235 64.3
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 2.1e-73 279.6 234 66.7
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 2.1e-73 279.6 234 67.1
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 2.8e-73 279.3 220 65.9
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 4.7e-73 278.5 221 66.1
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 4.7e-73 278.5 242 66.9
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 6.2e-73 278.1 234 63.2
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 6.2e-73 278.1 220 67.3
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 6.2e-73 278.1 249 65.9
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 8.1e-73 277.7 219 69.9
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.4e-72 276.9 235 62.1
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.4e-72 276.9 232 69.0
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 4.0e-72 275.4 214 66.8
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 5.2e-72 275.0 218 65.6
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 1.5e-71 273.5 220 69.5
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.4e-71 272.3 221 63.8
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 3.4e-71 272.3 229 61.6
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 7.6e-71 271.2 212 69.3
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 7.6e-71 271.2 214 63.6
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 7.6e-71 271.2 230 60.4
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 9.9e-71 270.8 242 61.2
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 9.9e-71 270.8 212 65.6
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 1.3e-70 270.4 241 65.1
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.7e-70 270.0 227 64.8
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.7e-70 270.0 234 62.8
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 1.7e-70 270.0 217 63.1
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 2.9e-70 269.2 233 60.5
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 4.9e-70 268.5 224 63.8
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 6.4e-70 268.1 238 61.3
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 1.4e-69 266.9 234 66.2
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 1.4e-69 266.9 229 66.4
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 2.4e-69 266.2 236 59.3
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 3.2e-69 265.8 296 55.7
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 5.4e-69 265.0 225 62.2
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 5.4e-69 265.0 234 60.3
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 7.1e-69 264.6 234 59.4
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.6e-68 263.5 236 58.9
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 2.7e-68 262.7 218 65.6
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 4.6e-68 261.9 225 64.0
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 6.0e-68 261.5 212 62.3
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.0e-67 260.8 219 62.6
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 3.0e-67 259.2 236 59.3
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 5.1e-67 258.5 230 59.1
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 8.7e-67 257.7 211 62.1
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.5e-66 256.9 218 64.7
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 3.3e-66 255.8 236 61.4
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 4.3e-66 255.4 255 57.6
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 2.1e-65 253.1 192 68.8
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 2.1e-65 253.1 221 61.1
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.1e-65 253.1 218 61.0
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 3.6e-65 252.3 222 62.6
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 1.4e-64 250.4 233 60.1
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.4e-64 250.4 226 56.2
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 3.1e-64 249.2 208 63.5
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 5.3e-64 248.4 222 61.7
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 3.4e-63 245.7 226 61.1
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.8e-62 242.3 224 57.6
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.4e-62 241.5 209 60.8
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 1.1e-61 240.7 234 55.6
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.4e-61 240.4 342 45.0
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 7.1e-61 238.0 222 55.4
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 7.1e-61 238.0 226 58.8
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 9.3e-61 237.7 219 58.9
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 9.3e-61 237.7 219 58.9
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.2e-60 237.3 224 58.5
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 2.1e-60 236.5 231 56.3
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 3.5e-60 235.7 229 56.8
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 3.5e-60 235.7 224 58.0
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 3.5e-60 235.7 236 57.6
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 7.9e-60 234.6 221 60.2
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.0e-59 234.2 219 58.0
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 1.3e-59 233.8 228 55.7
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 2.3e-59 233.0 216 61.6
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 3.9e-59 232.3 216 56.5
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 3.9e-59 232.3 213 60.1
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 5.1e-59 231.9 228 56.6
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 2.1e-57 226.5 230 55.2
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.1e-57 226.5 202 61.9
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 4.8e-57 225.3 246 52.8
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 9.0e-56 221.1 168 67.3
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 3.4e-55 219.2 222 51.4
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 6.4e-54 214.9 193 59.1
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 8.4e-54 214.5 238 49.2
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 1.1e-53 214.2 186 66.1
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 2.7e-52 209.5 128 79.7
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 7.9e-52 208.0 145 71.0
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 4.3e-50 202.2 174 65.5
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 7.4e-50 201.4 128 77.3
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 1.2e-47 194.1 127 75.6
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 8.4e-46 188.0 195 56.4
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 1.1e-45 187.6 182 53.8
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 3.2e-45 186.0 182 53.3
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 3.2e-45 186.0 182 53.3
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 7.9e-44 181.4 240 46.2
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.5e-42 177.2 174 55.7
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 4.3e-42 175.6 196 48.5
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 4.1e-40 169.1 187 56.1
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 3.4e-39 166.0 206 47.6
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.0e-38 164.5 187 58.3
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 1.3e-38 164.1 371 33.4
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 3.9e-35 152.5 176 51.1
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 4.1e-32 142.5 286 37.4
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 8.8e-19 98.2 269 33.1
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 1.1e-18 97.8 120 45.0
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 2.6e-15 86.7 230 30.0
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.0e-14 84.7 167 35.9
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 6.5e-14 82.0 109 45.0
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.5e-13 80.1 72 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 6.1e-12 75.5 170 35.3
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 1.0e-11 74.7 63 57.1
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.4e-11 74.3 193 30.6
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.8e-11 73.9 55 67.3
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.3e-11 73.6 91 44.0
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.3e-11 73.6 86 45.3
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.5e-10 70.9 59 66.1
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 1.5e-10 70.9 173 32.4
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 2.2e-09 67.0 44 72.7
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 2.4e-08 63.5 95 46.3
Solyc07g053615.1 Solanum lycopersicum HOM05D000175 ORTHO05D000481 1.0e-06 58.2 62 43.5
Sopen07g027570 Solanum pennellii HOM05D000175 ORTHO05D000481 1.0e-06 58.2 62 43.5
PGSC0003DMG400009379 Solanum tuberosum HOM05D000175 ORTHO05D000481 1.0e-06 58.2 62 43.5
Nitab4.5_0005191g0060 Nicotiana tabacum HOM05D000175 ORTHO05D000481 2.9e-06 56.6 62 41.9
Peaxi162Scf00845g00119 Petunia axillaris HOM05D000175 ORTHO05D000481 3.8e-06 56.2 62 41.9
Solyc02g077670.3 Solanum lycopersicum HOM05D000175 ORTHO05D000481 3.8e-06 56.2 62 43.5
Sopen02g022570 Solanum pennellii HOM05D000175 ORTHO05D000481 3.8e-06 56.2 62 43.5
PGSC0003DMG400031750 Solanum tuberosum HOM05D000175 ORTHO05D000481 3.8e-06 56.2 62 43.5
Aqoxy1G02281 Aquilegia oxysepala HOM05D000175 ORTHO05D000481 5.0e-06 55.8 62 41.9
CAN.G209.2 Capsicum annuum HOM05D000175 ORTHO05D000481 5.0e-06 55.8 62 41.9
ClCG04G004800 Citrullus lanatus HOM05D000175 ORTHO05D009401 5.0e-06 55.8 66 48.5
Haze_21622 Corylus avellana HOM05D000175 ORTHO05D010751 5.0e-06 55.8 62 45.2
AUR62024840 Chenopodium quinoa HOM05D000175 ORTHO05D000481 6.5e-06 55.5 62 43.5
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 6.5e-06 55.5 62 40.3
Nitab4.5_0000621g0080 Nicotiana tabacum HOM05D000175 ORTHO05D000481 6.5e-06 55.5 62 40.3
PGR042G2661 Punica granatum HOM05D000175 ORTHO05D000481 6.5e-06 55.5 62 41.9
Sed0026938 Sechium edule HOM05D000175 ORTHO05D009401 6.5e-06 55.5 66 47.0
EL10Ac2g02540 Beta vulgaris HOM05D000175 ORTHO05D000481 8.5e-06 55.1 62 43.5
CSS0023744 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D009401 8.5e-06 55.1 66 48.5
CiPaw.10G044400 Carya illinoinensis HOM05D000175 ORTHO05D009401 8.5e-06 55.1 66 45.5
Cc05_g07720 Coffea canephora HOM05D000175 ORTHO05D000481 8.5e-06 55.1 62 41.9
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 8.5e-06 55.1 61 45.9
Sc07g0007930 Simmondsia chinensis HOM05D000175 ORTHO05D009401 8.5e-06 55.1 69 44.9
Zm00001eb118880 Zea mays HOM05D000175 ORTHO05D000481 8.5e-06 55.1 62 43.5


User provided reference genes

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