Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 4.5e-53 211.1 112 100.0
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 1.2e-50 203.0 112 95.5
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 2.7e-50 201.8 112 93.8
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 4.3e-40 167.9 112 78.6
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 7.7e-37 157.1 95 83.2
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 3.4e-29 131.7 113 67.3
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 5.9e-29 131.0 98 72.4
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 3.3e-24 115.2 101 61.4
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 3.1e-22 108.6 98 61.2
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 4.1e-22 108.2 99 58.6
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 4.1e-22 108.2 99 58.6
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 5.3e-22 107.8 106 53.8
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 2.6e-21 105.5 110 51.8
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 2.6e-21 105.5 101 56.4
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 4.5e-21 104.8 95 56.8
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 7.7e-21 104.0 100 58.0
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 7.7e-21 104.0 108 56.5
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 1.0e-20 103.6 103 59.2
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 5.0e-20 101.3 95 54.7
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 8.5e-20 100.5 118 52.5
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 1.9e-19 99.4 115 49.6
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 1.9e-19 99.4 111 47.7
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 2.5e-19 99.0 94 53.2
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 7.2e-19 97.4 111 49.5
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 7.2e-19 97.4 110 50.9
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 7.2e-19 97.4 65 75.4
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 9.4e-19 97.1 99 54.5
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 9.4e-19 97.1 99 54.5
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 1.2e-18 96.7 94 52.1
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 1.2e-18 96.7 107 52.3
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 2.1e-18 95.9 108 51.9
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 2.1e-18 95.9 117 52.1
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 2.1e-18 95.9 94 60.6
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 2.1e-18 95.9 90 57.8
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 2.1e-18 95.9 108 52.8
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.7e-18 95.5 108 50.9
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 3.6e-18 95.1 108 50.0
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 3.6e-18 95.1 70 67.1
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 3.6e-18 95.1 104 52.9
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 3.6e-18 95.1 104 52.9
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 4.7e-18 94.7 104 51.9
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 4.7e-18 94.7 61 72.1
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 6.1e-18 94.4 111 51.4
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 6.1e-18 94.4 106 51.9
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 6.1e-18 94.4 101 55.4
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 6.1e-18 94.4 117 48.7
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 8.0e-18 94.0 113 52.2
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 8.0e-18 94.0 105 52.4
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 8.0e-18 94.0 105 52.4
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 8.0e-18 94.0 108 50.0
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 1.0e-17 93.6 104 51.0
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 1.0e-17 93.6 105 50.5
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.4e-17 93.2 52 82.7
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 1.4e-17 93.2 112 51.8
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 1.8e-17 92.8 105 52.4
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 1.8e-17 92.8 104 51.0
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.8e-17 92.8 74 63.5
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.8e-17 92.8 61 70.5
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 2.3e-17 92.4 104 51.9
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 2.3e-17 92.4 94 50.0
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 3.0e-17 92.0 103 51.5
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 4.0e-17 91.7 114 51.8
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 4.0e-17 91.7 111 50.5
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 5.2e-17 91.3 104 50.0
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 5.2e-17 91.3 110 50.9
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 5.2e-17 91.3 104 51.0
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 6.7e-17 90.9 108 50.0
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 6.7e-17 90.9 115 49.6
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 6.7e-17 90.9 115 45.2
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 8.8e-17 90.5 113 49.6
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 8.8e-17 90.5 105 50.5
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 1.2e-16 90.1 103 54.4
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.2e-16 90.1 111 49.5
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 1.5e-16 89.7 96 51.0
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 1.5e-16 89.7 104 49.0
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 2.6e-16 89.0 76 61.8
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 3.3e-16 88.6 110 48.2
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 3.3e-16 88.6 96 54.2
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 4.4e-16 88.2 95 51.6
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 4.4e-16 88.2 107 49.5
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 5.7e-16 87.8 47 78.7
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 5.7e-16 87.8 117 45.3
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 7.5e-16 87.4 99 53.5
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 9.7e-16 87.0 107 44.9
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 1.3e-15 86.7 63 66.7
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 1.7e-15 86.3 52 76.9
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 6.3e-15 84.3 103 48.5
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 1.4e-14 83.2 111 50.5
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 2.4e-14 82.4 48 70.8
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 2.4e-14 82.4 63 61.9
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 9.1e-14 80.5 72 56.9
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 2.7e-13 79.0 95 46.3
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 4.5e-13 78.2 88 50.0
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 1.0e-12 77.0 97 43.3
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 1.3e-12 76.6 82 53.7
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 1.7e-12 76.3 74 51.4
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 3.8e-12 75.1 103 46.6
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 2.5e-11 72.4 62 59.7
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 2.5e-11 72.4 88 48.9
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 4.2e-11 71.6 57 61.4
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 9.4e-11 70.5 110 46.4
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 9.4e-11 70.5 110 46.4
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 8.0e-10 67.4 89 48.3
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 1.8e-09 66.2 87 46.0
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 1.8e-09 66.2 58 60.3
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 6.8e-09 64.3 58 58.6
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 7.5e-08 60.8 98 40.8
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 1.3e-07 60.1 85 42.4
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 3.1e-06 55.5 101 40.6
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 4.1e-06 55.1 85 41.2
SMO367G0828 Selaginella moellendorffii HOM05D006906 ORTHO05D008578 7.0e-06 54.3 45 60.0


User provided reference genes

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