Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 2.4e-64 248.8 139 100.0
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 3.1e-11 72.4 37 97.3
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 6.4e-09 64.7 80 53.8
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.2e-08 62.4 80 52.5
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 4.2e-08 62.0 38 86.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.2e-07 60.5 37 81.1
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.6e-07 60.1 38 86.8
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.6e-07 60.1 39 82.1
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 2.1e-07 59.7 37 83.8
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 2.7e-07 59.3 38 78.9
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 2.7e-07 59.3 38 78.9
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 3.5e-07 58.9 39 82.1
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 4.6e-07 58.5 39 87.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 4.6e-07 58.5 39 84.6
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 6.0e-07 58.2 39 76.9
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 7.9e-07 57.8 39 87.2
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 7.9e-07 57.8 37 73.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 7.9e-07 57.8 82 51.2
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 7.9e-07 57.8 38 78.9
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 7.9e-07 57.8 38 78.9
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 7.9e-07 57.8 38 78.9
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 7.9e-07 57.8 38 78.9
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 7.9e-07 57.8 38 78.9
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.0e-06 57.4 37 75.7
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.0e-06 57.4 39 76.9
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.0e-06 57.4 39 84.6
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.3e-06 57.0 40 82.5
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.3e-06 57.0 40 82.5
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.7e-06 56.6 39 84.6
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.7e-06 56.6 39 84.6
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.7e-06 56.6 39 84.6
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.7e-06 56.6 38 73.7
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.3e-06 56.2 39 74.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.3e-06 56.2 39 74.4
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.3e-06 56.2 39 74.4
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 3.0e-06 55.8 38 73.7
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 3.0e-06 55.8 38 86.8
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.0e-06 55.8 41 73.2
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.0e-06 55.8 41 73.2
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 3.0e-06 55.8 39 82.1
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.9e-06 55.5 38 71.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 3.9e-06 55.5 38 71.1
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 3.9e-06 55.5 41 78.0
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 5.1e-06 55.1 39 79.5
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 5.1e-06 55.1 41 78.0
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 5.1e-06 55.1 40 77.5
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 5.1e-06 55.1 41 70.7
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 6.6e-06 54.7 39 74.4
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 6.6e-06 54.7 38 73.7
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 6.6e-06 54.7 40 77.5
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 6.6e-06 54.7 39 74.4
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 6.6e-06 54.7 39 74.4
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 8.7e-06 54.3 39 76.9
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 8.7e-06 54.3 39 71.8
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 8.7e-06 54.3 38 84.2
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 8.7e-06 54.3 39 79.5
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 8.7e-06 54.3 40 77.5
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 8.7e-06 54.3 40 77.5
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 8.7e-06 54.3 38 73.7


User provided reference genes

Program Settings