Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 5.4e-111 404.4 221 100.0
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.3e-109 399.1 221 98.2
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.6e-105 385.6 224 94.6
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 1.1e-95 353.6 220 86.4
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.1e-94 349.4 221 86.0
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 1.9e-79 299.7 231 73.2
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 1.0e-77 293.9 219 74.9
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 4.4e-68 261.9 214 69.6
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 2.4e-66 256.1 214 66.8
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 3.5e-65 252.3 214 66.4
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 3.8e-64 248.8 214 64.5
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 1.5e-63 246.9 214 64.5
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 2.5e-63 246.1 212 67.0
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 4.2e-63 245.4 213 64.8
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.2e-63 245.4 214 64.5
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 5.5e-63 245.0 214 64.0
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 2.1e-62 243.0 216 63.9
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 2.7e-62 242.7 215 64.2
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.0e-61 240.7 214 63.1
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 5.2e-61 238.4 210 63.8
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 1.1e-60 237.3 215 60.9
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 5.7e-60 235.0 217 64.5
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 1.3e-59 233.8 210 62.9
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 3.1e-58 229.2 210 62.4
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 3.1e-58 229.2 214 59.8
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 1.7e-56 223.4 213 60.6
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.2e-56 223.0 207 63.3
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 2.2e-56 223.0 220 58.2
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 2.2e-56 223.0 216 60.2
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 2.9e-56 222.6 213 60.6
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 2.9e-56 222.6 223 57.0
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 3.8e-56 222.2 210 61.9
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 5.0e-56 221.9 215 59.5
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 5.0e-56 221.9 215 60.0
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 6.5e-56 221.5 213 60.1
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 8.5e-56 221.1 200 63.0
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.1e-55 220.7 213 60.6
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 1.5e-55 220.3 217 61.3
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 3.2e-55 219.2 211 59.2
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.6e-54 216.9 210 59.5
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 2.7e-54 216.1 211 59.2
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 8.0e-54 214.5 207 59.4
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.0e-53 214.2 220 55.9
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 5.2e-53 211.8 213 59.2
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 2.0e-52 209.9 211 55.9
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 2.6e-52 209.5 183 65.6
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 2.6e-52 209.5 217 54.8
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 4.4e-52 208.8 214 57.0
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 5.7e-52 208.4 223 55.2
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 7.5e-52 208.0 213 56.8
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 4.8e-51 205.3 217 53.0
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 8.3e-51 204.5 216 55.6
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 3.1e-50 202.6 217 52.1
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 4.1e-50 202.2 219 55.3
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 5.4e-50 201.8 213 54.5
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 1.2e-49 200.7 213 56.3
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 1.2e-49 200.7 208 54.8
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 1.6e-49 200.3 210 54.8
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 2.7e-49 199.5 202 58.4
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 3.5e-49 199.1 211 55.0
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 7.7e-49 198.0 211 54.5
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.7e-48 196.8 209 54.5
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 2.2e-48 196.4 203 54.2
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 2.2e-48 196.4 213 54.5
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 1.5e-47 193.7 214 53.3
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 3.2e-47 192.6 216 51.4
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.2e-47 192.6 215 54.0
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 4.2e-47 192.2 216 51.9
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.2e-46 190.7 210 55.2
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 4.7e-46 188.7 209 50.7
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.0e-45 187.6 225 49.3
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.4e-45 187.2 212 51.9
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.8e-45 186.8 210 52.4
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 2.3e-45 186.4 210 54.3
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 5.2e-45 185.3 211 51.7
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 6.8e-45 184.9 210 53.3
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 1.5e-44 183.7 211 52.1
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 2.0e-44 183.3 216 51.9
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 2.6e-44 183.0 211 50.7
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 3.4e-44 182.6 211 50.7
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 7.5e-44 181.4 216 50.9
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.7e-43 180.3 213 50.7
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.2e-43 179.9 212 52.8
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 4.9e-43 178.7 212 52.4
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 6.3e-43 178.3 212 50.0
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 6.3e-43 178.3 212 50.5
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 6.3e-43 178.3 212 51.9
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.1e-42 177.6 213 50.2
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 3.5e-41 172.6 210 48.6
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 1.3e-40 170.6 212 47.2
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 2.9e-40 169.5 213 46.9
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 2.9e-40 169.5 221 48.9
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 3.8e-40 169.1 210 48.1
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 1.9e-39 166.8 213 47.4
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 5.6e-39 165.2 206 47.6
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 9.5e-39 164.5 216 48.6
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 1.2e-38 164.1 209 47.8
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.6e-38 163.7 212 46.7
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.6e-38 163.7 199 49.7
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.1e-38 163.3 209 47.4
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.4e-37 160.6 165 55.8
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.4e-37 160.6 213 45.5
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 1.8e-37 160.2 214 46.7
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 5.2e-37 158.7 200 47.0
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.5e-36 157.1 224 46.0
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 2.0e-36 156.8 219 45.7
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 2.6e-36 156.4 207 44.9
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 7.5e-36 154.8 219 43.8
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 9.8e-36 154.5 206 46.1
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 2.9e-35 152.9 210 44.8
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.4e-34 150.6 215 44.7
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 2.4e-34 149.8 216 41.7
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 7.0e-34 148.3 218 42.7
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 7.0e-34 148.3 215 44.2
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 9.2e-34 147.9 199 45.7
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 9.2e-34 147.9 221 44.3
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.2e-33 147.5 213 43.7
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.2e-33 147.5 214 44.4
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 2.7e-33 146.4 208 45.7
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.0e-32 144.4 142 58.5
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.7e-32 143.7 208 43.8
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.3e-32 143.3 214 43.0
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 3.9e-32 142.5 201 44.3
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 3.9e-32 142.5 190 47.9
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 2.1e-30 136.7 203 43.8
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 2.8e-30 136.3 207 42.5
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 4.7e-30 135.6 193 45.6
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 4.7e-30 135.6 193 45.6
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 6.2e-30 135.2 193 46.1
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.4e-29 134.0 142 55.6
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 1.8e-29 133.7 193 45.6
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 5.2e-29 132.1 217 39.6
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 6.8e-29 131.7 198 43.9
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 1.2e-28 131.0 197 43.1
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 2.6e-28 129.8 187 45.5
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 4.9e-27 125.6 200 43.0
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 3.2e-26 122.9 216 41.2
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 3.2e-26 122.9 216 41.2
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 4.1e-26 122.5 139 51.8
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 5.4e-26 122.1 115 59.1
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 5.4e-26 122.1 142 50.0
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 1.6e-25 120.6 214 39.3
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.3e-24 117.5 213 39.0
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.3e-24 117.5 220 37.3
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 6.6e-24 115.2 209 37.8
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 3.3e-23 112.8 215 38.1
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.2e-20 104.4 206 37.9
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.6e-20 103.2 187 39.6
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 6.4e-19 98.6 118 50.8
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 3.2e-18 96.3 138 42.8
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 4.1e-18 95.9 208 35.6
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 1.7e-11 73.9 104 46.2
Phvul.008G182701 Phaseolus vulgaris HOM05D004648 ORTHO05D307582 1.4e-10 70.9 99 44.4


User provided reference genes

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