Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g030080 Solanum pennellii HOM05D001083 ORTHO05D022300 2.0e-83 312.4 157 100.0
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 7.4e-78 293.9 152 97.4
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 4.0e-76 288.1 152 95.4
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.9e-73 279.3 152 91.4
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 2.4e-73 278.9 152 91.4
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.2e-72 276.6 152 90.1
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 2.7e-72 275.4 152 91.4
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 1.3e-71 273.1 152 89.5
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 1.8e-71 272.7 152 88.8
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 3.0e-71 271.9 152 88.8
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 3.9e-71 271.6 152 87.5
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 3.9e-71 271.6 152 88.8
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 6.7e-71 270.8 152 88.8
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 8.7e-71 270.4 152 87.5
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 1.1e-70 270.0 152 87.5
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 1.9e-70 269.2 152 88.2
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 1.9e-70 269.2 152 86.8
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 2.5e-70 268.9 152 86.8
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 2.5e-70 268.9 152 86.8
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 3.3e-70 268.5 152 87.5
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 3.3e-70 268.5 152 87.5
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 3.3e-70 268.5 152 88.8
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 4.3e-70 268.1 152 88.2
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 4.3e-70 268.1 152 86.8
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 4.3e-70 268.1 152 86.8
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 4.3e-70 268.1 152 86.2
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 4.3e-70 268.1 152 86.2
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 5.6e-70 267.7 152 86.2
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 5.6e-70 267.7 152 85.5
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 9.6e-70 266.9 150 86.7
MBI06_g36047_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D006562 9.6e-70 266.9 152 86.8
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 9.6e-70 266.9 150 87.3
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 1.3e-69 266.5 152 86.2
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 1.3e-69 266.5 152 86.2
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 1.3e-69 266.5 152 86.8
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 1.6e-69 266.2 152 84.9
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 2.1e-69 265.8 152 86.8
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 2.1e-69 265.8 152 86.8
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 2.1e-69 265.8 152 86.8
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 2.1e-69 265.8 152 85.5
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 2.1e-69 265.8 152 86.8
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 2.1e-69 265.8 152 86.2
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 2.8e-69 265.4 152 84.9
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 2.8e-69 265.4 152 86.2
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 2.8e-69 265.4 151 85.4
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 2.8e-69 265.4 150 86.7
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 3.7e-69 265.0 152 84.9
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 3.7e-69 265.0 152 86.2
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 3.7e-69 265.0 152 85.5
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 3.7e-69 265.0 150 87.3
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 4.8e-69 264.6 152 84.9
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 4.8e-69 264.6 152 85.5
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 6.2e-69 264.2 152 84.2
Duzib116G0753 Durio zibethinus HOM05D001083 ORTHO05D006562 6.2e-69 264.2 152 84.2
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 6.2e-69 264.2 152 86.8
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 8.2e-69 263.8 152 85.5
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 8.2e-69 263.8 152 86.2
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 8.2e-69 263.8 148 88.5
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 8.2e-69 263.8 150 86.0
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 8.2e-69 263.8 152 82.9
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 8.2e-69 263.8 152 84.9
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 1.1e-68 263.5 152 85.5
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 1.1e-68 263.5 152 84.9
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 1.1e-68 263.5 152 86.2
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.4e-68 263.1 152 86.2
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 1.4e-68 263.1 152 86.2
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 1.4e-68 263.1 150 85.3
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 1.4e-68 263.1 152 85.5
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 1.4e-68 263.1 152 84.9
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 1.8e-68 262.7 152 86.8
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.8e-68 262.7 152 83.6
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 1.8e-68 262.7 152 83.6
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 1.8e-68 262.7 149 85.9
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 1.8e-68 262.7 150 86.0
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 2.4e-68 262.3 152 84.2
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 5.3e-68 261.2 152 83.6
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 5.3e-68 261.2 152 85.5
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 5.3e-68 261.2 152 85.5
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 6.9e-68 260.8 152 82.9
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 6.9e-68 260.8 152 82.9
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 6.9e-68 260.8 152 82.9
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 6.9e-68 260.8 152 82.9
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 6.9e-68 260.8 152 84.9
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 6.9e-68 260.8 152 84.9
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 9.0e-68 260.4 152 82.9
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 9.0e-68 260.4 152 82.9
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 1.2e-67 260.0 152 82.9
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 1.2e-67 260.0 152 82.9
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 1.2e-67 260.0 152 82.9
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 1.2e-67 260.0 152 82.9
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 1.5e-67 259.6 147 88.4
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 1.5e-67 259.6 151 82.8
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 1.5e-67 259.6 151 82.8
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.5e-67 259.6 149 86.6
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.5e-67 259.6 149 86.6
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 1.5e-67 259.6 148 84.5
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 1.5e-67 259.6 150 84.7
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 2.0e-67 259.2 152 82.9
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 3.4e-67 258.5 152 82.2
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 3.4e-67 258.5 152 82.2
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 4.5e-67 258.1 152 83.6
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 4.5e-67 258.1 152 82.2
Os08g0478800 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 1.0e-66 256.9 148 84.5
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 1.3e-66 256.5 150 84.0
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 1.3e-66 256.5 147 83.7
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 1.3e-66 256.5 150 85.3
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 1.7e-66 256.1 152 82.9
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 2.2e-66 255.8 148 81.1
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 2.9e-66 255.4 150 82.7
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 4.9e-66 254.6 148 84.5
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 6.5e-66 254.2 147 83.0
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 8.4e-66 253.8 152 83.6
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 1.4e-65 253.1 149 83.2
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 7.1e-65 250.8 180 72.2
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 1.6e-64 249.6 152 82.2
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 4.6e-64 248.1 185 73.0
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 1.0e-63 246.9 166 74.7
HPP92_024662 Vanilla planifolia HOM05D001083 ORTHO05D022300 1.5e-62 243.0 147 83.0
CDE10G1263 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 9.7e-62 240.4 150 78.7
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 3.7e-61 238.4 140 85.0
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 4.8e-61 238.0 197 65.0
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 7.6e-59 230.7 150 74.0
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 2.9e-58 228.8 150 74.0
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 3.6e-56 221.9 128 85.9
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 2.3e-55 219.2 143 74.1
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 1.7e-50 203.0 150 68.0
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 2.7e-48 195.7 150 66.7
SHI06379 Sapria himalayana HOM05D001083 ORTHO05D006562 1.0e-47 193.7 141 68.8
Cc05_g03780 Coffea canephora HOM05D001083 ORTHO05D022300 7.4e-46 187.6 104 85.6
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 7.4e-46 187.6 108 88.0
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.4e-44 183.3 109 83.5
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 1.4e-44 183.3 109 79.8
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 5.9e-43 177.9 129 74.4
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 1.5e-38 163.3 132 68.2
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 5.7e-38 161.4 131 64.9
Glyma.14G180501 Glycine max HOM05D001083 ORTHO05D022300 1.6e-35 153.3 83 95.2
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 2.9e-34 149.1 84 92.9
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 2.5e-33 146.0 84 89.3
CDE10G0693 Ceratophyllum demersum HOM05D001083 ORTHO05D022300 1.0e-31 140.6 81 90.1
RcHm_v2.0_Chr6g0272701 Rosa chinensis HOM05D001083 ORTHO05D022300 4.5e-19 98.6 59 83.1
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 2.6e-14 82.8 50 84.0


User provided reference genes

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