Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 2.9e-177 625.2 329 100.0
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 5.7e-173 610.9 329 97.9
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 2.9e-161 572.0 331 90.3
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 3.0e-158 562.0 332 90.7
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.8e-156 554.7 329 87.8
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.1e-152 543.5 329 87.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.1e-115 418.7 334 67.4
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 3.5e-114 415.6 337 70.6
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 6.6e-113 411.4 332 66.0
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.3e-112 409.1 332 66.0
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.2e-111 407.1 325 67.1
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 7.6e-109 397.9 330 63.9
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.7e-108 396.7 326 66.0
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.4e-108 394.8 328 62.5
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.1e-107 394.0 334 63.5
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.6e-106 388.7 331 64.4
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 8.7e-105 384.4 330 63.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.1e-104 384.0 323 63.2
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.5e-104 382.9 332 61.4
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.5e-104 382.9 330 62.1
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.8e-103 378.6 324 61.7
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.2e-101 374.0 332 59.0
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.0e-101 373.2 384 55.5
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.5e-101 372.1 324 61.1
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.5e-101 372.1 324 61.1
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 7.6e-101 371.3 332 62.0
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 9.9e-101 370.9 332 60.5
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.1e-99 367.5 330 61.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.4e-99 367.1 332 61.4
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.9e-99 366.7 323 61.3
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 4.2e-99 365.5 331 60.7
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.6e-98 363.6 330 58.8
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.0e-98 361.7 330 58.5
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.3e-97 359.8 331 59.8
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.9e-97 359.0 330 60.3
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.9e-97 359.0 330 60.3
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 8.7e-97 357.8 330 57.9
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 8.7e-97 357.8 333 60.7
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.6e-96 355.1 330 58.5
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.6e-95 353.6 332 58.7
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 5.3e-94 348.6 332 57.5
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.5e-93 347.1 332 56.6
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.6e-93 346.3 326 57.4
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 3.8e-92 342.4 329 57.8
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.9e-91 340.1 331 58.3
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 2.7e-90 336.3 333 56.5
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 7.9e-90 334.7 325 55.4
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 5.6e-88 328.6 337 56.4
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.6e-87 327.0 339 54.0
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 8.2e-87 324.7 329 57.1
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.8e-86 323.6 333 55.0
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 5.3e-86 322.0 332 53.0
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 6.9e-86 321.6 337 54.6
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 9.0e-86 321.2 331 56.5
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 5.8e-85 318.5 332 55.4
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 5.8e-85 318.5 338 54.7
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 7.6e-85 318.2 388 49.0
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.0e-84 317.8 339 56.3
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.3e-84 317.4 332 51.8
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 6.5e-84 315.1 332 54.8
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 8.4e-84 314.7 332 54.5
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.9e-83 313.5 332 53.0
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.5e-83 313.2 338 54.1
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 4.2e-83 312.4 338 54.1
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.2e-82 310.8 267 63.7
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.6e-82 310.5 332 53.6
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.8e-81 307.0 319 55.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 8.7e-81 304.7 332 51.5
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 4.3e-80 302.4 325 54.8
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 7.4e-80 301.6 331 51.1
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.7e-80 301.2 332 53.0
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.6e-79 300.4 332 53.0
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 4.8e-79 298.9 388 46.1
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.4e-78 297.4 319 54.5
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 2.0e-77 293.5 404 44.8
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 2.6e-77 293.1 332 50.0
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.6e-77 291.6 278 56.5
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.7e-76 290.4 332 48.8
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.8e-76 289.3 278 55.8
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.4e-75 287.3 305 53.8
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 9.4e-75 284.6 329 51.1
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 2.7e-74 283.1 333 49.8
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.6e-74 282.3 332 50.3
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 7.9e-74 281.6 325 49.5
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 6.7e-73 278.5 332 47.6
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.5e-72 277.3 275 55.6
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.9e-72 276.9 332 47.3
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 8.2e-71 271.6 323 48.3
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.1e-70 271.2 389 44.5
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.8e-70 270.4 329 50.5
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 9.1e-70 268.1 327 50.2
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.2e-69 267.7 324 50.9
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 5.9e-69 265.4 334 48.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.9e-69 265.4 333 47.1
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.9e-67 260.4 321 47.7
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 3.2e-67 259.6 284 49.3
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 7.9e-66 255.0 264 52.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.4e-65 254.2 321 50.2
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 8.8e-65 251.5 334 48.5
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.3e-63 247.7 373 43.4
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 4.1e-62 242.7 341 44.6
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 4.1e-62 242.7 337 46.9
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.6e-61 240.0 328 44.8
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.0e-60 238.0 339 45.4
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.7e-60 237.3 309 47.2
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 8.5e-60 235.0 389 39.8
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 7.2e-59 231.9 354 42.1
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 4.7e-58 229.2 364 41.2
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.8e-57 227.3 325 43.1
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 3.0e-57 226.5 308 45.8
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 6.7e-57 225.3 257 49.0
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.1e-56 224.6 310 46.1
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 5.7e-56 222.2 330 43.6
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 9.7e-56 221.5 329 44.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 9.7e-56 221.5 329 44.1
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.4e-54 217.6 332 43.1
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 5.3e-54 215.7 305 43.0
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 7.0e-54 215.3 330 41.2
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-53 213.8 302 42.7
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.6e-53 213.4 256 47.3
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-52 211.1 331 41.1
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 3.8e-52 209.5 333 40.5
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 3.8e-52 209.5 155 68.4
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.5e-51 207.6 360 38.9
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 7.2e-51 205.3 330 42.4
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 6.1e-50 202.2 297 39.4
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.0e-49 201.4 197 53.3
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.4e-49 201.1 292 41.1
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 5.2e-49 199.1 302 40.7
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 5.7e-48 195.7 311 41.8
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 4.8e-47 192.6 302 40.4
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.1e-46 191.4 304 40.8
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 4.1e-46 189.5 173 57.8
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 9.1e-46 188.3 302 39.1
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 2.2e-44 183.7 210 49.5
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 5.0e-44 182.6 315 39.7
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-43 181.4 146 65.1
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.6e-42 176.4 176 56.2
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.4e-41 174.5 152 63.2
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.3e-41 173.7 372 34.1
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.5e-40 168.7 278 41.0
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 8.3e-39 165.2 312 36.5
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.1e-38 164.9 142 60.6
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.0e-37 160.6 214 45.8
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 6.6e-36 155.6 151 58.9
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 7.2e-35 152.1 159 49.1
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 7.2e-35 152.1 328 35.7
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.6e-34 149.8 159 52.2
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.7e-34 149.4 159 52.2
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 8.0e-34 148.7 218 41.3
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.8e-33 147.5 260 40.8
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 2.6e-32 143.7 244 36.1
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.1e-30 138.3 374 29.7
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 5.4e-30 136.0 233 41.6
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 3.5e-29 133.3 133 57.9
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-28 131.0 134 58.2
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 2.9e-28 130.2 194 45.9
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.5e-27 127.9 112 59.8
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.9e-27 127.5 130 54.6
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 7.3e-27 125.6 294 33.0
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.7e-23 114.4 262 32.1
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.7e-20 104.4 94 56.4
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.5e-19 101.3 221 35.7
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.5e-19 101.3 221 35.7
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 2.5e-19 100.5 324 29.9
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.1e-17 95.1 294 32.3
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 8.9e-17 92.0 204 34.8
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.6e-16 90.5 214 28.0
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 4.4e-16 89.7 138 39.1
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 4.4e-16 89.7 138 39.1
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.4e-16 89.7 48 81.2
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.3e-15 88.2 195 31.3
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 2.9e-15 87.0 281 29.5
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-14 85.1 79 55.7
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 2.7e-13 80.5 84 53.6
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 1.1e-11 75.1 100 56.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-10 71.6 60 65.0
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-08 65.1 50 64.0
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 2.6e-08 63.9 54 53.7
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-06 57.4 89 42.7
MBI07_g40370_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.2e-06 57.0 77 44.2


User provided reference genes

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