Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 2.8e-48 194.9 95 100.0
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 2.8e-48 194.9 95 100.0
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 4.6e-43 177.6 95 89.5
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 4.6e-43 177.6 95 89.5
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 2.6e-38 161.8 95 78.9
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.7e-37 159.1 91 81.3
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 1.7e-37 159.1 95 77.9
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 2.9e-37 158.3 95 80.0
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 3.8e-37 157.9 88 81.8
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 3.8e-37 157.9 89 79.8
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 3.8e-37 157.9 89 79.8
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 3.8e-37 157.9 88 81.8
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 3.8e-37 157.9 95 77.9
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 3.8e-37 157.9 95 77.9
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.8e-37 157.9 95 82.1
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 3.8e-37 157.9 95 77.9
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 5.0e-37 157.5 95 81.1
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.1e-36 156.4 95 81.1
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 2.5e-36 155.2 95 77.9
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.5e-36 155.2 95 80.0
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 3.2e-36 154.8 95 77.9
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 3.2e-36 154.8 95 77.9
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 4.2e-36 154.5 80 85.0
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.2e-36 154.5 95 77.9
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.2e-36 154.5 95 77.9
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 4.2e-36 154.5 95 77.9
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 5.5e-36 154.1 95 75.8
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 7.2e-36 153.7 95 78.9
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.2e-36 153.7 79 86.1
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 9.4e-36 153.3 79 86.1
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.4e-36 153.3 79 86.1
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.4e-36 153.3 79 86.1
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.4e-36 153.3 79 86.1
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 9.4e-36 153.3 95 76.8
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.2e-35 152.9 92 78.3
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.2e-35 152.9 79 86.1
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 1.2e-35 152.9 95 76.8
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 1.2e-35 152.9 94 77.7
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.2e-35 152.9 95 75.8
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.6e-35 152.5 95 76.8
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.6e-35 152.5 94 76.6
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 1.6e-35 152.5 92 79.3
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 1.6e-35 152.5 93 77.4
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.1e-35 152.1 92 77.2
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.1e-35 152.1 90 80.0
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 2.1e-35 152.1 86 77.9
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.1e-35 152.1 91 78.0
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 2.7e-35 151.8 94 77.7
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.7e-35 151.8 93 74.2
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 2.7e-35 151.8 96 80.2
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 2.7e-35 151.8 95 77.9
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 2.7e-35 151.8 88 80.7
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 2.7e-35 151.8 95 77.9
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 2.7e-35 151.8 79 84.8
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 3.6e-35 151.4 79 84.8
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 3.6e-35 151.4 93 78.5
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 4.7e-35 151.0 86 81.4
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 6.1e-35 150.6 94 73.4
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 7.9e-35 150.2 79 84.8
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.9e-35 150.2 79 83.5
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 7.9e-35 150.2 92 76.1
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 1.0e-34 149.8 94 75.5
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 1.4e-34 149.4 94 75.5
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.4e-34 149.4 95 76.8
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.4e-34 149.4 91 76.9
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 1.8e-34 149.1 93 77.4
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.8e-34 149.1 88 79.5
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.8e-34 149.1 93 77.4
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.8e-34 149.1 93 76.3
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.8e-34 149.1 93 76.3
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.8e-34 149.1 91 76.9
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 2.3e-34 148.7 91 78.0
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.3e-34 148.7 95 74.7
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 2.3e-34 148.7 88 78.4
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 3.0e-34 148.3 92 75.0
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 3.0e-34 148.3 92 77.2
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 3.0e-34 148.3 95 75.8
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 3.9e-34 147.9 93 72.0
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 3.9e-34 147.9 87 79.3
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 3.9e-34 147.9 92 77.2
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 5.2e-34 147.5 89 78.7
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 5.2e-34 147.5 78 85.9
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 5.2e-34 147.5 70 100.0
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 6.7e-34 147.1 79 83.5
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 8.8e-34 146.7 93 75.3
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 8.8e-34 146.7 93 74.2
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.1e-33 146.4 93 75.3
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.1e-33 146.4 89 77.5
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.1e-33 146.4 92 77.2
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.5e-33 146.0 95 74.7
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.5e-33 146.0 95 74.7
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.5e-33 146.0 95 73.7
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.0e-33 145.6 79 82.3
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 2.0e-33 145.6 95 74.7
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.0e-33 145.6 86 76.7
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.0e-33 145.6 86 76.7
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 2.6e-33 145.2 91 74.7
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 2.6e-33 145.2 95 73.7
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 3.3e-33 144.8 92 73.9
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 3.3e-33 144.8 93 74.2
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 75.5
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 4.4e-33 144.4 87 75.9
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 4.4e-33 144.4 71 95.8
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 4.4e-33 144.4 91 74.7
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.4e-33 144.4 86 76.7
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 5.7e-33 144.1 95 71.6
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 7.4e-33 143.7 93 73.1
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 9.7e-33 143.3 92 76.1
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.3e-32 142.9 86 76.7
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 1.7e-32 142.5 89 75.3
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 1.7e-32 142.5 79 82.3
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 2.2e-32 142.1 91 73.6
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 2.2e-32 142.1 91 73.6
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 2.8e-32 141.7 93 72.0
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 2.8e-32 141.7 93 72.0
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 2.8e-32 141.7 93 72.0
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 2.8e-32 141.7 93 72.0
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 2.8e-32 141.7 93 72.0
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 3.7e-32 141.4 119 58.0
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.7e-32 141.4 71 90.1
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 4.8e-32 141.0 91 72.5
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 4.8e-32 141.0 91 72.5
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.8e-32 141.0 70 91.4
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.4e-31 139.4 93 73.1
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.8e-31 139.0 89 74.2
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 2.4e-31 138.7 95 74.7
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 7.0e-31 137.1 93 72.0
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 9.1e-31 136.7 91 71.4
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 9.1e-31 136.7 83 73.5
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 2.6e-30 135.2 70 85.7
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.6e-30 135.2 85 71.8
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 3.5e-30 134.8 78 78.2
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.9e-30 134.0 95 68.4
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.3e-29 132.9 70 84.3
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.7e-29 132.5 71 84.5
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 2.9e-29 131.7 70 84.3
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 2.9e-29 131.7 85 71.8
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 1.9e-28 129.0 70 81.4
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 6.1e-27 124.0 115 58.3
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 8.0e-27 123.6 91 67.0
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 1.4e-26 122.9 71 77.5
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.8e-26 122.5 71 80.3
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 6.3e-24 114.0 67 76.1
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.1e-23 111.3 95 60.0
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 7.0e-23 110.5 71 70.4
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 2.0e-22 109.0 70 72.9
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 5.9e-22 107.5 71 70.4
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 5.5e-20 100.9 50 88.0
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 5.5e-20 100.9 76 64.5
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 3.0e-18 95.1 69 63.8
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 8.8e-18 93.6 81 60.5
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.4e-17 91.7 83 55.4
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 3.4e-17 91.7 76 56.6
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.8e-17 90.1 53 71.7
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.8e-17 90.1 53 71.7
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.8e-17 90.1 53 71.7
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.8e-17 90.1 53 71.7
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.3e-16 87.4 58 67.2
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 4.1e-15 84.7 49 77.6
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.1e-15 83.6 49 69.4
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.7e-14 82.0 48 77.1
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.7e-14 80.5 49 71.4
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 2.3e-13 79.0 78 48.7
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 6.1e-11 70.9 54 59.3
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 6.8e-10 67.4 56 55.4
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 4.4e-09 64.7 46 71.7


User provided reference genes

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