Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g029650 Solanum pennellii HOM05D010872 ORTHO05D013672 5.3e-41 171.4 152 100.0
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 1.9e-38 162.9 152 82.9
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 9.8e-11 70.9 155 43.2
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.9e-10 69.3 155 42.6
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 5.4e-09 65.1 169 36.1
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 7.0e-09 64.7 169 40.2
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 1.2e-08 63.9 143 44.8
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.0e-08 63.2 155 46.5
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 2.7e-08 62.8 151 45.0
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 2.7e-08 62.8 154 35.1
AL1G49920 Arabidopsis lyrata HOM05D010872 ORTHO05D013672 4.6e-08 62.0 43 58.1
AT1G35210 Arabidopsis thaliana HOM05D010872 ORTHO05D013672 4.6e-08 62.0 43 58.1
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 4.6e-08 62.0 146 41.1
CARHR287280 Cardamine hirsuta HOM05D010872 ORTHO05D013672 5.9e-08 61.6 42 59.5
Sopen06g012470 Solanum pennellii HOM05D046744 ORTHO05D051269 5.9e-08 61.6 45 68.9
Thhalv10001870m.g Eutrema salsugineum HOM05D010872 ORTHO05D013672 7.8e-08 61.2 43 58.1
Sp1g29940 Schrenkiella parvula HOM05D010872 ORTHO05D013672 2.3e-07 59.7 43 55.8
Aa31LG6G8650 Aethionema arabicum HOM05D010872 ORTHO05D013672 3.0e-07 59.3 40 65.0
Carub.0001s3286 Capsella rubella HOM05D010872 ORTHO05D013672 3.0e-07 59.3 47 57.4
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 3.0e-07 59.3 151 59.6
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 3.0e-07 59.3 151 59.6
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 5.0e-07 58.5 149 49.0
BcaB03g13666 Brassica carinata HOM05D010872 ORTHO05D013672 6.6e-07 58.2 45 48.9
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 6.6e-07 58.2 155 46.5
A05p23830 Brassica napus HOM05D010872 ORTHO05D013672 8.6e-07 57.8 45 48.9
BraA05t21254Z Brassica rapa HOM05D010872 ORTHO05D013672 8.6e-07 57.8 45 48.9
PGSC0003DMG400028893 Solanum tuberosum HOM05D000121 ORTHO05D000102 8.6e-07 57.8 45 64.4
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.1e-06 57.4 156 48.7
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 1.5e-06 57.0 156 43.6
THA.LOC104816630 Tarenaya hassleriana HOM05D010872 ORTHO05D013672 1.5e-06 57.0 45 53.3
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 1.9e-06 56.6 151 41.7
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.9e-06 56.6 135 45.9
BcaC05g27742 Brassica carinata HOM05D010872 ORTHO05D013672 2.5e-06 56.2 45 48.9
C05p37280 Brassica napus HOM05D010872 ORTHO05D013672 2.5e-06 56.2 45 48.9
BolC5t32474H Brassica oleracea HOM05D010872 ORTHO05D013672 2.5e-06 56.2 45 48.9
Sopen12g029780 Solanum pennellii HOM05D059644 ORTHO05D004477 2.5e-06 56.2 37 73.0
PGSC0003DMG400017769 Solanum tuberosum HOM05D059644 ORTHO05D004477 2.5e-06 56.2 37 73.0
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.5e-06 56.2 137 32.8
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.3e-06 55.5 42 59.5
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.3e-06 55.5 42 59.5
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 7.3e-06 54.7 40 57.5
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 9.5e-06 54.3 169 31.4
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 9.5e-06 54.3 36 63.9
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 9.5e-06 54.3 36 63.9
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 9.5e-06 54.3 36 63.9


User provided reference genes

Program Settings