Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 3.0e-122 442.2 282 100.0
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 4.8e-120 434.9 282 98.6
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 8.5e-117 424.1 282 96.5
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 5.3e-111 404.8 282 74.5
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 1.9e-100 369.8 204 89.7
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 5.0e-93 345.1 284 66.2
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 8.5e-93 344.4 284 68.0
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 9.1e-87 324.3 203 78.3
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 3.8e-85 318.9 180 85.0
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 8.5e-85 317.8 234 71.4
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 8.5e-85 317.8 180 85.0
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 1.5e-84 317.0 187 80.7
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.5e-84 317.0 181 84.0
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 2.5e-84 316.2 183 82.5
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 1.6e-83 313.5 168 87.5
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 1.6e-83 313.5 196 77.0
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 2.7e-83 312.8 180 83.9
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 3.6e-83 312.4 209 72.7
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 3.6e-83 312.4 181 82.9
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 6.1e-83 311.6 182 80.2
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 8.0e-83 311.2 179 84.4
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 8.0e-83 311.2 204 74.0
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 1.4e-82 310.5 180 81.7
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 1.8e-82 310.1 180 82.2
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 3.0e-82 309.3 183 81.4
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 3.0e-82 309.3 178 83.1
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 4.0e-82 308.9 181 81.8
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 6.8e-82 308.1 219 72.6
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 6.8e-82 308.1 186 79.0
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 1.2e-81 307.4 182 79.1
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 1.5e-81 307.0 180 80.0
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 2.0e-81 306.6 210 74.3
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 2.0e-81 306.6 233 66.5
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.0e-81 306.6 178 82.6
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 2.6e-81 306.2 234 67.5
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 3.4e-81 305.8 282 65.6
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 5.7e-81 305.1 180 80.6
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 7.5e-81 304.7 185 77.3
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 1.7e-80 303.5 233 67.0
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 1.7e-80 303.5 182 78.0
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 1.7e-80 303.5 237 66.7
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 2.2e-80 303.1 282 63.5
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 2.2e-80 303.1 184 77.7
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 2.8e-80 302.8 179 78.8
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 6.3e-80 301.6 183 77.6
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 6.3e-80 301.6 181 79.6
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 1.8e-79 300.1 180 77.2
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 5.4e-79 298.5 184 77.2
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 2.0e-78 296.6 190 74.7
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 2.0e-78 296.6 178 80.3
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 2.7e-78 296.2 181 79.0
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 3.5e-78 295.8 179 80.4
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 4.5e-78 295.4 183 75.4
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 5.9e-78 295.0 183 75.4
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 5.9e-78 295.0 184 75.5
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 7.7e-78 294.7 184 75.0
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 1.7e-77 293.5 184 76.6
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 1.7e-77 293.5 168 81.0
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 2.3e-77 293.1 179 76.0
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 3.8e-77 292.4 183 75.4
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 3.8e-77 292.4 178 77.0
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 3.8e-77 292.4 202 69.3
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 8.6e-77 291.2 184 73.9
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 4.2e-76 288.9 243 60.5
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 4.2e-76 288.9 281 56.9
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 5.6e-76 288.5 181 75.7
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 9.5e-76 287.7 184 73.4
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 8.0e-75 284.6 184 72.3
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 8.0e-75 284.6 184 72.3
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 3.0e-74 282.7 269 58.4
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 5.2e-74 282.0 213 68.5
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 6.8e-74 281.6 169 79.3
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 6.8e-74 281.6 170 78.8
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 6.8e-74 281.6 234 64.1
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 1.2e-73 280.8 184 71.2
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 3.4e-73 279.3 210 66.2
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 3.4e-73 279.3 190 72.6
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 4.9e-72 275.4 215 65.1
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 2.0e-70 270.0 148 83.1
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 2.3e-69 266.5 212 64.2
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 2.9e-69 266.2 231 62.8
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.9e-68 263.5 145 82.8
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 2.5e-68 263.1 169 71.0
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 5.6e-68 261.9 232 57.3
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 2.8e-67 259.6 150 80.0
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 2.0e-65 253.4 221 61.5
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.6e-65 253.1 235 59.1
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 3.4e-65 252.7 164 75.6
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 3.7e-64 249.2 180 65.0
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 4.9e-64 248.8 196 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 4.3e-60 235.7 229 55.0
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 9.5e-60 234.6 200 60.0
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 1.1e-58 231.1 320 45.3
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.4e-58 230.7 191 67.5
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 4.0e-58 229.2 190 67.4
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 2.0e-57 226.9 178 66.3
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 9.8e-57 224.6 229 53.7
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.1e-55 221.1 131 78.6
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 5.4e-55 218.8 125 81.6
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 2.5e-52 209.9 367 37.6
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 5.6e-52 208.8 154 68.2
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 5.2e-50 202.2 115 83.5
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 5.8e-49 198.7 193 52.8
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 8.6e-45 184.9 102 85.3
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 1.1e-42 177.9 98 84.7
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 2.7e-38 163.3 145 57.2
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 8.7e-37 158.3 114 63.2
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 7.3e-36 155.2 145 58.6
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 4.2e-31 139.4 81 80.2
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 5.5e-23 112.5 107 56.1
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 4.0e-18 96.3 99 53.5
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 2.6e-17 93.6 112 48.2
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 4.6e-14 82.8 61 63.9
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 7.6e-09 65.5 57 66.7
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 5.5e-07 59.3 29 89.7
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 9.3e-07 58.5 34 85.3


User provided reference genes

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