Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.1e-137 493.8 350 100.0
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.7e-114 416.8 350 82.3
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 3.0e-111 406.0 350 73.4
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.9e-97 360.1 323 77.4
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.3e-95 354.0 350 66.3
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 4.7e-93 345.5 362 61.0
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.1e-92 344.4 348 72.1
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.3e-71 274.2 368 49.7
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 6.7e-71 271.9 376 53.5
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.9e-70 270.4 367 48.0
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 4.3e-70 269.2 353 53.0
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 3.7e-69 266.2 357 52.4
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 1.2e-67 261.2 372 50.0
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.5e-67 260.8 355 48.7
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.0e-66 258.1 360 57.2
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 4.9e-66 255.8 358 50.3
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 6.5e-66 255.4 357 50.1
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.4e-65 254.2 379 53.6
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.5e-65 253.4 365 54.5
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 7.1e-65 251.9 365 46.8
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 9.3e-65 251.5 360 53.6
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 2.7e-64 250.0 375 52.8
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 2.7e-64 250.0 361 52.4
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.6e-64 249.2 363 50.7
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 7.9e-64 248.4 365 49.9
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.0e-63 248.1 354 50.6
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.3e-63 247.7 359 48.7
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 8.7e-63 245.0 359 49.6
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.1e-62 244.6 362 45.9
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 1.5e-62 244.2 363 47.1
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 1.5e-62 244.2 361 47.6
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.5e-62 243.4 363 47.1
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 3.3e-62 243.0 373 57.6
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.3e-62 243.0 361 46.8
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.3e-62 242.7 362 45.9
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 7.4e-62 241.9 363 50.1
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.6e-61 240.7 359 46.0
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 2.2e-61 240.4 353 45.0
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.2e-61 240.4 362 47.0
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 3.7e-61 239.6 352 52.0
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 4.8e-61 239.2 371 48.0
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 6.3e-61 238.8 363 44.9
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 1.8e-60 237.3 352 46.6
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.8e-60 237.3 362 55.2
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.4e-60 236.9 359 44.8
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 1.2e-59 234.6 371 45.3
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.5e-59 234.2 372 45.2
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 1.5e-59 234.2 374 47.3
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 2.0e-59 233.8 353 46.5
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 2.6e-59 233.4 365 51.2
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.5e-59 232.6 360 46.4
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 4.5e-59 232.6 369 48.2
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 7.7e-59 231.9 378 54.5
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 7.7e-59 231.9 347 51.3
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.0e-58 231.5 363 47.1
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 1.0e-58 231.5 356 46.3
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 6.5e-58 228.8 355 45.6
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 1.9e-57 227.3 363 55.9
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.5e-57 226.9 357 47.3
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.2e-57 226.5 370 46.5
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.2e-57 226.5 370 46.5
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 2.1e-56 223.8 365 46.6
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 3.6e-56 223.0 361 50.4
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 6.1e-56 222.2 360 52.8
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.0e-55 221.5 352 49.1
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.1e-54 218.0 370 47.6
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 9.7e-54 214.9 326 45.1
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-53 214.5 359 47.4
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.7e-53 214.2 174 66.1
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.8e-53 212.6 175 62.3
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.4e-52 211.1 163 65.0
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 2.4e-52 210.3 368 52.4
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 9.1e-52 208.4 369 52.8
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.5e-51 207.6 356 47.5
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.5e-51 207.6 351 43.9
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 3.4e-51 206.5 366 43.4
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 3.4e-51 206.5 366 43.4
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 3.4e-51 206.5 366 43.4
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.4e-51 206.5 357 43.1
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 7.7e-51 205.3 350 51.4
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.0e-50 204.9 362 43.4
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.3e-50 204.5 364 51.4
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-50 204.5 347 51.6
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 2.2e-50 203.8 359 44.8
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 3.8e-50 203.0 366 45.1
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 3.8e-50 203.0 376 44.9
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 6.5e-50 202.2 350 46.3
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.4e-49 201.1 365 39.2
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 1.9e-49 200.7 375 44.5
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.5e-49 200.3 178 61.2
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.5e-49 200.3 348 37.6
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 4.2e-49 199.5 352 52.6
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 5.5e-49 199.1 347 52.2
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 7.2e-49 198.7 355 47.0
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 3.6e-48 196.4 368 48.6
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 3.6e-48 196.4 354 54.8
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 7.9e-48 195.3 345 42.3
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.3e-47 193.7 366 50.8
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 2.3e-47 193.7 377 53.3
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 6.7e-47 192.2 357 46.8
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-46 190.3 345 49.6
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 7.4e-46 188.7 351 39.3
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.7e-45 187.6 170 56.5
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 3.7e-45 186.4 342 47.4
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 3.7e-45 186.4 344 47.1
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 4.8e-45 186.0 342 46.5
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 8.2e-45 185.3 376 51.9
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.4e-44 184.5 342 46.5
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.4e-44 184.5 164 57.3
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 1.8e-44 184.1 356 46.3
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.4e-44 183.7 164 57.3
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 9.1e-44 181.8 349 43.3
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-42 177.6 376 52.1
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-42 177.6 376 52.1
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-42 177.6 376 52.1
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 1.1e-41 174.9 293 65.9
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 2.1e-40 170.6 174 52.9
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 4.7e-40 169.5 363 41.0
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 8.0e-40 168.7 363 43.8
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.8e-39 167.5 345 38.0
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 3.0e-39 166.8 353 41.6
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-38 164.9 345 37.7
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.1e-38 164.9 355 38.6
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 3.3e-38 163.3 356 40.4
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 7.4e-38 162.2 343 40.5
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 7.4e-38 162.2 350 43.7
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 7.4e-38 162.2 290 43.8
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 7.4e-38 162.2 310 39.0
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.3e-37 161.4 168 53.0
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 3.7e-37 159.8 344 39.0
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 3.7e-37 159.8 344 39.0
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 3.7e-37 159.8 344 39.0
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 3.7e-37 159.8 350 42.3
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 3.1e-36 156.8 344 38.1
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 7.0e-36 155.6 349 45.3
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 9.1e-36 155.2 346 42.2
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 2.6e-35 153.7 358 35.2
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.6e-35 153.7 167 49.1
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 1.3e-34 151.4 364 32.7
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 2.2e-34 150.6 349 36.7
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 6.5e-34 149.1 346 40.5
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.5e-33 147.9 338 34.6
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.5e-33 147.9 328 52.7
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.2e-32 144.8 134 57.5
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 6.1e-32 142.5 362 32.9
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-30 137.9 343 33.5
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 2.0e-30 137.5 162 49.4
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 3.4e-30 136.7 345 32.8
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 7.5e-30 135.6 343 31.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 6.3e-29 132.5 160 45.6
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 4.1e-28 129.8 343 30.6
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.7e-26 124.4 408 29.7
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 2.9e-26 123.6 246 42.7
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 2.5e-25 120.6 172 43.0
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 3.2e-25 120.2 377 32.4
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 7.2e-25 119.0 208 41.8
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.6e-24 117.9 165 44.2
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 6.8e-23 112.5 353 29.7
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.6e-22 110.5 356 30.1
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 7.5e-22 109.0 376 31.4
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 4.8e-21 106.3 370 51.6
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.8e-20 104.4 142 45.1
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 9.1e-20 102.1 363 27.5
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 2.7e-19 100.5 159 40.9
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 3.5e-19 100.1 358 42.7
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.5e-17 94.7 360 43.1
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 3.3e-17 93.6 94 55.3
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 2.0e-11 74.3 215 37.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 5.2e-07 59.7 171 28.7
ATR0153G003 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.6e-06 57.4 62 48.4
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 7.5e-06 55.8 49 51.0
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 9.8e-06 55.5 112 34.8


User provided reference genes

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