Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 1.7e-84 316.2 190 100.0
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 1.2e-79 300.1 190 89.5
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.1e-70 270.4 201 82.1
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 1.8e-41 173.3 192 51.0
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 3.9e-41 172.2 193 58.0
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.8e-38 163.3 196 55.1
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 4.5e-29 132.1 167 46.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 6.7e-25 118.2 159 48.4
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.5e-24 117.1 175 41.1
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.3e-23 114.0 160 45.0
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.3e-22 108.6 180 41.1
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 4.5e-21 105.5 88 56.8
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.7e-21 104.8 98 54.1
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.9e-20 102.8 173 38.2
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 3.8e-20 102.4 86 57.0
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.8e-20 102.4 78 61.5
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 3.8e-20 102.4 84 56.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 5.0e-20 102.1 94 55.3
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 6.5e-20 101.7 72 66.7
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.1e-19 100.9 66 72.7
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.1e-19 100.9 73 64.4
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.4e-19 100.5 81 58.0
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.4e-19 100.5 78 60.3
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 1.9e-19 100.1 187 32.6
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.5e-19 99.8 70 64.3
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 3.2e-19 99.4 81 56.8
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 4.2e-19 99.0 80 58.8
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 7.2e-19 98.2 76 59.2
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 9.4e-19 97.8 94 53.2
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.6e-18 97.1 82 57.3
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.6e-18 97.1 78 57.7
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.6e-18 97.1 79 58.2
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 2.1e-18 96.7 83 55.4
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 4.6e-18 95.5 84 57.1
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 6.1e-18 95.1 78 57.7
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 7.9e-18 94.7 80 57.5
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.9e-18 94.7 80 57.5
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.0e-17 94.4 82 57.3
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.0e-17 94.4 82 57.3
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.0e-17 94.4 79 53.2
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.0e-17 94.4 80 57.5
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.0e-17 94.4 80 56.2
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.0e-17 94.4 79 57.0
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.4e-17 94.0 82 56.1
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.4e-17 94.0 82 56.1
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.3e-17 93.2 80 56.2
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 3.0e-17 92.8 84 56.0
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 3.0e-17 92.8 82 57.3
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 3.0e-17 92.8 82 57.3
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 3.0e-17 92.8 82 57.3
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.0e-17 92.8 85 54.1
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.0e-17 92.8 93 50.5
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.0e-17 92.8 85 54.1
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 6.7e-17 91.7 82 56.1
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 6.7e-17 91.7 82 56.1
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 8.8e-17 91.3 82 56.1
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 8.8e-17 91.3 82 56.1
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.8e-17 91.3 92 50.0
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.1e-16 90.9 84 56.0
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.1e-16 90.9 78 52.6
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.5e-16 90.5 68 63.2
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.5e-16 90.5 93 49.5
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.5e-16 90.5 76 59.2
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 2.0e-16 90.1 82 54.9
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 2.0e-16 90.1 74 56.8
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 2.5e-16 89.7 78 55.1
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 3.3e-16 89.4 76 55.3
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 4.3e-16 89.0 83 49.4
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 4.3e-16 89.0 82 54.9
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.7e-16 88.6 77 51.9
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.4e-16 88.2 85 51.8
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 7.4e-16 88.2 73 61.6
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.3e-15 87.4 68 61.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.3e-15 87.4 68 61.8
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 1.3e-15 87.4 53 75.5
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.7e-15 87.0 113 42.5
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 2.8e-15 86.3 76 56.6
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.8e-15 86.3 82 53.7
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 2.8e-15 86.3 78 56.4
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 3.7e-15 85.9 149 45.6
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 3.7e-15 85.9 74 55.4
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 4.8e-15 85.5 67 59.7
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 6.3e-15 85.1 65 58.5
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 6.3e-15 85.1 65 58.5
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 6.3e-15 85.1 78 52.6
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 8.2e-15 84.7 70 55.7
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.2e-15 84.7 77 57.1
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 8.2e-15 84.7 77 57.1
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.1e-14 84.3 77 49.4
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.4e-14 84.0 70 55.7
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.4e-14 83.2 76 47.4
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 2.4e-14 83.2 73 54.8
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.4e-14 83.2 66 54.5
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 2.4e-14 83.2 65 55.4
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 5.3e-14 82.0 78 53.8
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.5e-13 80.5 72 52.8
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.5e-13 80.5 78 52.6
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.0e-13 80.1 94 45.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.0e-13 80.1 94 45.7
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.0e-13 80.1 78 48.7
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 2.0e-13 80.1 75 53.3
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.6e-13 79.7 67 56.7
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.6e-13 79.7 67 56.7
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.6e-13 79.7 77 45.5
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.4e-13 79.3 68 55.9
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 4.5e-13 79.0 71 53.5
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 5.9e-13 78.6 71 53.5
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.0e-12 77.8 67 58.2
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.0e-12 77.8 67 58.2
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.7e-12 77.0 78 46.2
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.9e-12 76.3 78 46.2
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.8e-12 75.9 64 57.8
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.8e-12 75.9 78 46.2
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 5.0e-12 75.5 83 49.4
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 6.5e-12 75.1 78 44.9
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.5e-12 74.7 78 50.0
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 1.1e-11 74.3 118 39.0
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.9e-11 73.6 78 43.6
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.9e-11 73.6 67 53.7
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 2.5e-11 73.2 78 46.2
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.5e-11 73.2 105 45.7
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 9.4e-11 71.2 79 44.3
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 9.4e-11 71.2 135 41.5
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.2e-10 70.9 62 53.2
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 3.6e-10 69.3 71 54.9
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 6.1e-10 68.6 83 49.4
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 1.8e-09 67.0 78 47.4
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 2.3e-09 66.6 98 32.7
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.0e-09 66.2 74 44.6
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 3.9e-09 65.9 73 46.6
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 3.9e-09 65.9 73 46.6
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 6.7e-09 65.1 76 46.1
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 8.8e-09 64.7 68 48.5
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 8.8e-09 64.7 74 44.6
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.5e-08 63.9 98 35.7
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.5e-08 63.9 76 46.1
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.5e-08 63.9 85 42.4
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 1.5e-08 63.9 43 67.4
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 2.6e-08 63.2 57 56.1
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 2.6e-08 63.2 57 56.1
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 3.3e-08 62.8 68 48.5
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 4.4e-08 62.4 74 37.8
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 9.7e-08 61.2 88 42.0
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 1.7e-07 60.5 77 37.7
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 1.7e-07 60.5 96 40.6
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 2.8e-07 59.7 99 40.4
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 3.7e-07 59.3 57 54.4
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 3.7e-07 59.3 82 43.9
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 8.2e-07 58.2 79 38.0


User provided reference genes

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