Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 3.4e-178 628.2 326 100.0
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.8e-163 579.3 331 91.5
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.1e-163 578.6 356 87.6
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 9.1e-139 497.3 332 82.2
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.0e-138 496.1 325 77.2
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.9e-136 489.6 317 77.6
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 9.4e-136 487.3 309 79.3
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.7e-135 485.7 326 76.1
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.2e-134 481.5 309 78.6
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.4e-133 478.4 322 79.5
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 2.8e-132 475.7 349 70.8
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.7e-127 458.4 394 63.5
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 4.1e-123 445.3 320 69.7
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 4.2e-120 435.3 324 67.0
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.2e-119 433.7 321 67.0
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 8.0e-119 431.0 320 68.1
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.4e-118 430.3 321 67.0
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.5e-117 426.8 308 68.2
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 7.5e-117 424.5 308 68.5
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.3e-116 423.7 328 64.6
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 1.7e-116 423.3 330 64.8
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.8e-116 422.5 324 66.7
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 4.9e-116 421.8 305 68.9
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 8.3e-116 421.0 328 65.2
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 8.3e-116 421.0 322 66.1
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.1e-115 420.6 326 64.4
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.8e-115 419.9 308 68.2
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.4e-115 419.5 325 65.8
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 3.1e-115 419.1 306 69.0
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 5.4e-115 418.3 304 68.8
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 9.2e-115 417.5 320 65.3
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.2e-114 417.2 349 63.9
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.7e-114 416.0 307 67.1
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 5.9e-114 414.8 317 64.7
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 2.3e-113 412.9 314 65.0
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 3.8e-113 412.1 320 65.9
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 8.6e-113 411.0 321 63.2
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.5e-112 410.2 272 75.7
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 2.5e-112 409.5 324 62.7
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 3.3e-112 409.1 330 63.6
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 7.3e-112 407.9 320 65.3
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 7.3e-112 407.9 310 65.2
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.2e-111 407.1 316 65.5
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 8.0e-111 404.4 324 60.5
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 8.0e-111 404.4 306 67.3
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 2.3e-110 402.9 305 67.2
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 2.3e-110 402.9 321 62.6
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 3.0e-110 402.5 317 62.1
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 4.0e-110 402.1 324 62.7
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 5.2e-110 401.7 321 61.7
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 6.8e-110 401.4 306 66.7
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 6.8e-110 401.4 317 62.1
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.5e-109 400.2 315 64.8
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.5e-109 400.2 326 63.5
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 3.4e-109 399.1 316 62.7
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.4e-109 399.1 329 62.6
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 3.4e-109 399.1 311 64.6
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 3.4e-109 399.1 323 61.9
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 3.4e-109 399.1 310 64.2
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 4.4e-109 398.7 305 66.6
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 5.7e-109 398.3 322 63.7
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.3e-108 397.1 323 61.3
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.2e-108 396.4 321 62.6
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 3.7e-108 395.6 320 62.8
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 5.4e-107 391.7 316 61.1
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 5.4e-107 391.7 321 60.4
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 9.2e-107 391.0 324 61.7
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 9.2e-107 391.0 306 63.1
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.6e-106 390.2 274 70.4
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 2.7e-106 389.4 311 60.8
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 4.6e-106 388.7 321 60.1
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.3e-105 387.1 321 60.1
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 3.9e-105 385.6 350 58.9
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 3.9e-105 385.6 316 59.2
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 5.0e-105 385.2 322 60.6
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.1e-104 384.0 317 62.5
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.1e-104 384.0 321 59.8
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.5e-104 383.6 308 61.7
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.9e-104 383.3 308 63.3
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 2.5e-104 382.9 308 62.7
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 2.5e-104 382.9 308 64.0
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 3.3e-104 382.5 306 63.4
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 4.3e-104 382.1 308 63.6
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.3e-104 382.1 344 57.8
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 4.3e-104 382.1 321 58.9
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 5.6e-104 381.7 308 63.0
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 5.6e-104 381.7 322 60.2
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 9.5e-104 380.9 308 63.0
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.2e-103 380.6 291 64.9
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 4.7e-103 378.6 316 62.0
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 4.7e-103 378.6 318 58.8
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 6.2e-103 378.3 322 59.9
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.3e-102 376.3 308 62.3
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.0e-101 373.2 312 61.2
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 4.4e-101 372.1 312 60.9
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.4e-101 372.1 338 56.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 5.8e-101 371.7 308 61.7
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.3e-100 370.5 272 68.8
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.7e-100 370.2 321 57.3
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.7e-100 370.2 273 65.6
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 4.9e-100 368.6 332 58.7
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.6e-98 363.6 322 60.6
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 2.7e-98 362.8 326 57.4
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 6.0e-98 361.7 271 64.9
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 7.8e-98 361.3 274 64.2
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.1e-96 357.5 308 59.1
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.5e-96 354.4 318 58.8
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-94 350.9 366 51.9
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-94 350.9 280 62.5
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.8e-94 350.1 302 59.3
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.6e-93 346.3 192 95.8
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 2.9e-92 342.8 301 58.8
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.9e-92 342.0 312 56.1
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 5.4e-91 338.6 324 57.1
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.6e-90 337.0 302 56.3
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 8.6e-89 331.3 326 54.3
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 8.6e-89 331.3 321 53.9
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 2.6e-85 319.7 321 54.2
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 7.6e-85 318.2 256 62.1
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.7e-84 317.0 247 62.3
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 5.4e-83 312.0 240 62.5
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 4.6e-82 308.9 221 76.5
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 3.0e-81 306.2 307 51.5
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 6.2e-79 298.5 317 52.7
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 5.8e-77 292.0 229 64.2
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.2e-75 286.2 248 66.1
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.9e-73 279.3 215 63.7
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 4.3e-72 275.8 231 58.4
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 6.9e-70 268.5 461 40.3
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.2e-69 267.7 307 49.8
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.5e-69 265.8 202 65.3
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.5e-66 256.1 313 46.3
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 4.8e-63 245.7 169 73.4
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.2e-59 232.6 184 64.7
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 7.9e-58 228.4 207 57.5
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.0e-57 226.5 180 66.1
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 5.6e-56 222.2 305 44.9
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 2.8e-55 219.9 214 55.1
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.8e-55 219.9 349 40.7
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.8e-55 219.2 274 46.0
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.4e-54 217.6 158 64.6
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.8e-54 217.2 178 61.8
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 6.5e-52 208.8 169 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 8.4e-52 208.4 192 56.2
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.9e-48 197.2 286 42.0
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 6.3e-47 192.2 146 65.8
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.4e-46 190.3 140 67.9
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 2.2e-44 183.7 132 68.2
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.8e-44 183.0 227 44.5
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 6.5e-44 182.2 163 57.1
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 6.1e-42 175.6 196 49.0
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.9e-40 170.6 335 39.1
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 3.8e-36 156.4 147 52.4
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.5e-36 155.6 150 52.7
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.0e-33 148.3 119 58.0
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 3.0e-33 146.7 115 59.1
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 3.9e-33 146.4 160 45.0
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 9.7e-32 141.7 184 44.6
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.2e-26 124.8 106 61.3
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.7e-26 123.6 112 58.0
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 3.0e-25 120.2 165 49.1
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 8.8e-25 118.6 142 48.6
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.8e-20 103.2 125 42.4
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.6e-18 97.8 82 59.8
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 4.7e-18 96.3 82 56.1
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-17 94.7 61 68.9
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 2.6e-16 90.5 112 44.6
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 2.4e-14 84.0 85 51.8
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 7.0e-14 82.4 65 60.0
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 5.9e-13 79.3 65 58.5
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.5e-11 73.9 91 42.9
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 4.7e-10 69.7 44 75.0


User provided reference genes

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