Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g028660 Solanum pennellii HOM05D001231 ORTHO05D001012 1.8e-43 178.7 81 100.0
Peaxi162Scf00376g00828 Petunia axillaris HOM05D001231 ORTHO05D001012 2.2e-25 118.6 81 70.4
Lalb_Chr12g0202761 Lupinus albus HOM05D001231 ORTHO05D001012 2.9e-09 65.1 76 38.2
Gohir.A09G211400 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.7e-09 64.7 70 42.9
Gohir.D09G204900 Gossypium hirsutum HOM05D001231 ORTHO05D001012 4.9e-09 64.3 70 41.4
Gorai.006G228900 Gossypium raimondii HOM05D001231 ORTHO05D001012 4.9e-09 64.3 70 41.4
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 4.9e-09 64.3 80 41.2
CSS0006682 Camellia sinensis var. sinensis HOM05D001231 ORTHO05D001012 1.4e-08 62.8 72 41.7
CSS0011856 Camellia sinensis var. sinensis HOM05D001231 ORTHO05D001012 1.4e-08 62.8 72 41.7
MD00G1135500 Malus domestica HOM05D001231 ORTHO05D001012 1.4e-08 62.8 71 42.3
HanXRQChr17g0533321 Helianthus annuus HOM05D001231 ORTHO05D001012 1.9e-08 62.4 81 39.5
Hund09739 Selenicereus undatus HOM05D001231 ORTHO05D001012 1.9e-08 62.4 74 41.9
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 3.2e-08 61.6 76 36.8
A02p42920 Brassica napus HOM05D001231 ORTHO05D001012 4.1e-08 61.2 74 43.2
C02p62860 Brassica napus HOM05D001231 ORTHO05D001012 4.1e-08 61.2 74 43.2
BolC2t12358H Brassica oleracea HOM05D001231 ORTHO05D001012 4.1e-08 61.2 74 43.2
BraA02t09214Z Brassica rapa HOM05D001231 ORTHO05D001012 5.4e-08 60.8 74 43.2
PSO541G3846 Papaver somniferum HOM05D001231 ORTHO05D001012 7.1e-08 60.5 77 40.3
PSO675G6539 Papaver somniferum HOM05D001231 ORTHO05D001012 7.1e-08 60.5 77 40.3
Hund09741 Selenicereus undatus HOM05D001231 ORTHO05D001012 7.1e-08 60.5 74 40.5
GSVIVG01036750001 Vitis vinifera HOM05D001231 ORTHO05D001012 7.1e-08 60.5 54 50.0
CiPaw.04G178300 Carya illinoinensis HOM05D001231 ORTHO05D001012 1.2e-07 59.7 72 38.9
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 1.2e-07 59.7 72 44.4
RcHm_v2.0_Chr5g0024091 Rosa chinensis HOM05D001231 ORTHO05D001012 1.2e-07 59.7 75 37.3
CAN.G976.2 Capsicum annuum HOM05D001231 ORTHO05D001012 1.6e-07 59.3 74 43.2
Nn7g38190 Nelumbo nucifera HOM05D001231 ORTHO05D001012 1.6e-07 59.3 72 41.7
Hund09734 Selenicereus undatus HOM05D001231 ORTHO05D001012 1.6e-07 59.3 74 40.5
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 2.1e-07 58.9 78 38.5
Lj4g0007075 Lotus japonicus HOM05D001231 ORTHO05D001012 2.1e-07 58.9 73 37.0
HanXRQChr12g0365811 Helianthus annuus HOM05D001231 ORTHO05D001012 2.7e-07 58.5 81 40.7
C02p50240 Brassica napus HOM05D001231 ORTHO05D001012 3.5e-07 58.2 74 40.5
BolC2t11102H Brassica oleracea HOM05D001231 ORTHO05D001012 3.5e-07 58.2 74 40.5
Eucgr.F03380 Eucalyptus grandis HOM05D001231 ORTHO05D001012 3.5e-07 58.2 75 36.0
Lalb_Chr22g0357361 Lupinus albus HOM05D001231 ORTHO05D001012 3.5e-07 58.2 77 36.4
Nn3g18726 Nelumbo nucifera HOM05D001231 ORTHO05D001012 3.5e-07 58.2 71 42.3
A02p32650 Brassica napus HOM05D001231 ORTHO05D001012 4.6e-07 57.8 74 40.5
BraA02t08280Z Brassica rapa HOM05D001231 ORTHO05D001012 4.6e-07 57.8 74 40.5
Migut.F00873 Erythranthe guttata HOM05D001231 ORTHO05D001012 4.6e-07 57.8 54 38.9
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 4.6e-07 57.8 80 38.8
Sp2g13520 Schrenkiella parvula HOM05D001231 ORTHO05D001012 4.6e-07 57.8 76 39.5
BcaB07g29697 Brassica carinata HOM05D001231 ORTHO05D001012 6.0e-07 57.4 51 45.1
Medtr3g097370 Medicago truncatula HOM05D001231 ORTHO05D001012 6.0e-07 57.4 51 49.0
Sed0017845 Sechium edule HOM05D001231 ORTHO05D001012 6.0e-07 57.4 80 41.2
CAN.G976.3 Capsicum annuum HOM05D001231 ORTHO05D001012 7.8e-07 57.0 82 41.5
Medtr3g032570 Medicago truncatula HOM05D001231 ORTHO05D001012 7.8e-07 57.0 75 37.3
SGA_v2.0_scaffold23G10229 Striga asiatica HOM05D001231 ORTHO05D001012 7.8e-07 57.0 66 39.4
BcaB04g20312 Brassica carinata HOM05D001231 ORTHO05D001012 1.0e-06 56.6 74 40.5
MBI06_g26879_MAGBIO Magnolia biondii HOM05D001231 ORTHO05D001012 1.0e-06 56.6 56 46.4
Nitab4.5_0000374g0060 Nicotiana tabacum HOM05D001231 ORTHO05D001012 1.0e-06 56.6 81 39.5
Prupe.7G070900 Prunus persica HOM05D001231 ORTHO05D001012 1.0e-06 56.6 80 36.2
BcaC03g18217 Brassica carinata HOM05D001231 ORTHO05D001012 1.3e-06 56.2 51 43.1
CARHR144760 Cardamine hirsuta HOM05D001231 ORTHO05D001012 1.3e-06 56.2 74 39.2
Thhalv10023787m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 1.3e-06 56.2 74 40.5
FvH4_3g14470 Fragaria vesca HOM05D020793 ORTHO05D025367 1.3e-06 56.2 74 32.4
FAN21G1429 Fragaria x ananassa HOM05D020793 ORTHO05D025367 1.3e-06 56.2 74 32.4
Gohir.D04G040300 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.3e-06 56.2 72 40.3
Gorai.012G045400 Gossypium raimondii HOM05D001231 ORTHO05D001012 1.3e-06 56.2 72 40.3
PSO541G0662 Papaver somniferum HOM05D001231 ORTHO05D001012 1.3e-06 56.2 77 39.0
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.3e-06 56.2 76 36.8
Hund18397 Selenicereus undatus HOM05D001231 ORTHO05D001012 1.3e-06 56.2 74 39.2
BcaC03g17116 Brassica carinata HOM05D001231 ORTHO05D001012 1.7e-06 55.8 74 39.2
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 1.7e-06 55.8 81 39.5
Duzib268G0639 Durio zibethinus HOM05D001231 ORTHO05D001012 1.7e-06 55.8 72 36.1
Gohir.D01G035700 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.7e-06 55.8 77 39.0
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.7e-06 55.8 72 38.9
BcaC04g21530 Brassica carinata HOM05D001231 ORTHO05D001012 2.3e-06 55.5 76 36.8
C09p30680 Brassica napus HOM05D001231 ORTHO05D001012 2.3e-06 55.5 76 36.8
BolC9t55933H Brassica oleracea HOM05D001231 ORTHO05D001012 2.3e-06 55.5 76 36.8
CARHR144790 Cardamine hirsuta HOM05D001231 ORTHO05D001012 2.3e-06 55.5 74 43.2
Duzib213G0741 Durio zibethinus HOM05D001231 ORTHO05D001012 2.3e-06 55.5 73 37.0
FAN25G0988 Fragaria x ananassa HOM05D001231 ORTHO05D001012 2.3e-06 55.5 53 41.5
Gohir.A05G375500 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.3e-06 55.5 72 38.9
Nn7g38263 Nelumbo nucifera HOM05D001231 ORTHO05D001012 2.3e-06 55.5 72 38.9
RcHm_v2.0_Chr5g0024081 Rosa chinensis HOM05D001231 ORTHO05D001012 2.3e-06 55.5 74 33.8
EL10Ac5g10884 Beta vulgaris HOM05D001231 ORTHO05D001012 3.0e-06 55.1 76 40.8
Gorai.002G043800 Gossypium raimondii HOM05D001231 ORTHO05D001012 3.0e-06 55.1 77 39.0
Prupe.7G071400 Prunus persica HOM05D001231 ORTHO05D001012 3.0e-06 55.1 80 36.2
RcHm_v2.0_Chr4g0445801 Rosa chinensis HOM05D001231 ORTHO05D001012 3.0e-06 55.1 68 36.8
Sed0025601 Sechium edule HOM05D001231 ORTHO05D001012 3.0e-06 55.1 72 40.3
Gohir.A01G044800 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.9e-06 54.7 77 39.0
Manes.05G122400 Manihot esculenta HOM05D001231 ORTHO05D001012 3.9e-06 54.7 73 37.0
Manes.07G074400 Manihot esculenta HOM05D001231 ORTHO05D001012 3.9e-06 54.7 73 38.4
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 3.9e-06 54.7 80 37.5
SalBow8G0100 Salvia bowleyana HOM05D001231 ORTHO05D001012 3.9e-06 54.7 74 39.2
SalBow8G5093 Salvia bowleyana HOM05D001231 ORTHO05D001012 3.9e-06 54.7 74 39.2
Lsat_1_v5_gn_5_70941 Lactuca sativa HOM05D001231 ORTHO05D001012 5.1e-06 54.3 51 45.1
Manes.18G077618 Manihot esculenta HOM05D001231 ORTHO05D001012 5.1e-06 54.3 71 39.4
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 5.1e-06 54.3 73 38.4
Prupe.7G070800 Prunus persica HOM05D001231 ORTHO05D001012 5.1e-06 54.3 80 36.2
SalBow8G3771 Salvia bowleyana HOM05D001231 ORTHO05D001012 5.1e-06 54.3 79 36.7
Sp2g13540 Schrenkiella parvula HOM05D001231 ORTHO05D001012 5.1e-06 54.3 74 39.2
BcaC09g49338 Brassica carinata HOM05D001231 ORTHO05D001012 6.6e-06 53.9 74 39.2
A01p29870 Brassica napus HOM05D001231 ORTHO05D001012 6.6e-06 53.9 74 39.2
C01p37750 Brassica napus HOM05D001231 ORTHO05D001012 6.6e-06 53.9 74 39.2
BolC1t03737H Brassica oleracea HOM05D001231 ORTHO05D001012 6.6e-06 53.9 74 39.2
BraA01t03115Z Brassica rapa HOM05D001231 ORTHO05D001012 6.6e-06 53.9 74 39.2
Cc06_g07890 Coffea canephora HOM05D001231 ORTHO05D001012 6.6e-06 53.9 72 41.7
FAN16G1567 Fragaria x ananassa HOM05D001231 ORTHO05D001012 6.6e-06 53.9 53 39.6
MD13G1012100 Malus domestica HOM05D001231 ORTHO05D001012 6.6e-06 53.9 82 36.6
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 6.6e-06 53.9 79 36.7
Thecc.02G298100 Theobroma cacao HOM05D001231 ORTHO05D001012 6.6e-06 53.9 74 39.2
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 8.6e-06 53.5 79 36.7
Migut.M01516 Erythranthe guttata HOM05D001231 ORTHO05D001012 8.6e-06 53.5 73 37.0
Lsat_1_v5_gn_0_7960 Lactuca sativa HOM05D019035 ORTHO05D001012 8.6e-06 53.5 73 38.4
Lalb_Chr07g0183991 Lupinus albus HOM05D001231 ORTHO05D001012 8.6e-06 53.5 77 39.0
Nn7g38191 Nelumbo nucifera HOM05D001231 ORTHO05D001012 8.6e-06 53.5 72 37.5
RcHm_v2.0_Chr4g0445791 Rosa chinensis HOM05D001231 ORTHO05D001012 8.6e-06 53.5 68 36.8
RcHm_v2.0_Chr4g0445851 Rosa chinensis HOM05D001231 ORTHO05D001012 8.6e-06 53.5 68 36.8


User provided reference genes

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