Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g028560 Solanum pennellii HOM05D005261 ORTHO05D006180 8.8e-204 713.4 354 100.0
Solyc04g072390.3 Solanum lycopersicum HOM05D005261 ORTHO05D006180 9.7e-203 709.9 354 99.2
CAN.G617.12 Capsicum annuum HOM05D005261 ORTHO05D006180 1.5e-190 669.5 354 92.9
Nitab4.5_0003428g0020 Nicotiana tabacum HOM05D005261 ORTHO05D006180 1.6e-184 649.4 354 90.7
Nitab4.5_0002561g0060 Nicotiana tabacum HOM05D005261 ORTHO05D006180 2.7e-184 648.7 354 91.0
Nitab4.5_0001915g0120 Nicotiana tabacum HOM05D005261 ORTHO05D006180 1.7e-183 646.0 355 90.7
Peaxi162Scf00756g00436 Petunia axillaris HOM05D005261 ORTHO05D006180 3.7e-162 575.1 321 88.8
Dinv44727 Davidia involucrata HOM05D005261 ORTHO05D006180 4.1e-145 518.5 357 73.7
Cc10_g05970 Coffea canephora HOM05D005261 ORTHO05D006180 5.4e-145 518.1 359 73.3
Dinv13059 Davidia involucrata HOM05D005261 ORTHO05D006180 2.5e-142 509.2 353 73.1
GSVIVG01008967001 Vitis vinifera HOM05D005261 ORTHO05D006180 2.4e-140 502.7 350 72.9
Actinidia31491 Actinidia chinensis HOM05D005261 ORTHO05D006180 1.3e-138 496.9 355 69.6
CiPaw.06G023200 Carya illinoinensis HOM05D005261 ORTHO05D006180 1.7e-138 496.5 354 70.9
RcHm_v2.0_Chr7g0240261 Rosa chinensis HOM05D005261 ORTHO05D006180 1.7e-138 496.5 355 70.4
Cfa015937 Carpinus fangiana HOM05D005261 ORTHO05D006180 2.2e-138 496.1 354 71.2
Atru.chr13.1289 Acer truncatum HOM05D005261 ORTHO05D006180 4.9e-138 495.0 361 70.6
QL12p035629 Quercus lobata HOM05D005261 ORTHO05D006180 8.4e-138 494.2 349 71.9
vmacro04773 Vaccinium macrocarpon HOM05D005261 ORTHO05D006180 4.1e-137 491.9 355 69.0
RhsimUnG0073100 Rhododendron simsii HOM05D005261 ORTHO05D006180 5.4e-137 491.5 355 69.9
Prupe.1G509000 Prunus persica HOM05D005261 ORTHO05D006180 9.2e-137 490.7 354 70.3
MSTRG.24247 Avicennia marina HOM05D005261 ORTHO05D006180 1.6e-136 490.0 353 70.0
Duzib093G0733 Durio zibethinus HOM05D005261 ORTHO05D006180 1.6e-136 490.0 355 69.6
FAN08G3477 Fragaria x ananassa HOM05D005261 ORTHO05D006180 4.6e-136 488.4 355 70.1
FvH4_5g38270 Fragaria vesca HOM05D005261 ORTHO05D006180 7.8e-136 487.6 355 70.1
Gorai.010G045400 Gossypium raimondii HOM05D005261 ORTHO05D006180 7.8e-136 487.6 360 70.8
Rhsim07G0199400 Rhododendron simsii HOM05D005261 ORTHO05D006180 7.8e-136 487.6 355 69.6
Gohir.D06G040600 Gossypium hirsutum HOM05D005261 ORTHO05D006180 3.9e-135 485.3 359 70.5
Thecc.08G114100 Theobroma cacao HOM05D005261 ORTHO05D006180 3.9e-135 485.3 356 70.5
FAN04G2261 Fragaria x ananassa HOM05D005261 ORTHO05D006180 6.6e-135 484.6 355 69.9
FAN13G1502 Fragaria x ananassa HOM05D005261 ORTHO05D006180 6.6e-135 484.6 355 69.6
FAN18G3314 Fragaria x ananassa HOM05D005261 ORTHO05D006180 6.6e-135 484.6 355 69.3
Ciclev10001407m.g Citrus clementina HOM05D005261 ORTHO05D006180 2.5e-134 482.6 357 69.5
Eucgr.H00927 Eucalyptus grandis HOM05D005261 ORTHO05D006180 5.6e-134 481.5 324 74.4
MD08G1174900 Malus domestica HOM05D005261 ORTHO05D006180 5.6e-134 481.5 355 68.7
TWI36G1273 Tripterygium wilfordii HOM05D005261 ORTHO05D006180 2.8e-133 479.2 358 69.6
Cpa.g.sc77.98 Carica papaya HOM05D005261 ORTHO05D006180 6.2e-133 478.0 358 69.3
Manes.02G212400 Manihot esculenta HOM05D005261 ORTHO05D006180 6.2e-133 478.0 353 69.4
CANSAT54G1848 Cannabis sativa HOM05D005261 ORTHO05D006180 2.4e-132 476.1 359 67.7
Aqoxy6G00521 Aquilegia oxysepala HOM05D005261 ORTHO05D006180 6.9e-132 474.6 354 67.2
Hma1.2p1_0276F.1_g111380 Hydrangea macrophylla HOM05D005261 ORTHO05D006180 2.6e-131 472.6 351 68.9
Haze_00548 Corylus avellana HOM05D005261 ORTHO05D006180 5.8e-131 471.5 385 64.9
VMungo1309G2277 Vigna mungo HOM05D005261 ORTHO05D006180 9.9e-131 470.7 358 68.4
DCAR_023858 Daucus carota HOM05D005261 ORTHO05D006180 2.9e-130 469.2 331 69.2
Sabra02G0072100 Salix brachista HOM05D005261 ORTHO05D006180 3.8e-130 468.8 355 67.6
CsaV3_2G033630 Cucumis sativus L. HOM05D005261 ORTHO05D006180 1.4e-129 466.8 351 67.5
Sed0017821 Sechium edule HOM05D005261 ORTHO05D006180 1.4e-129 466.8 322 71.7
Glyma.04G107300 Glycine max HOM05D005261 ORTHO05D006180 2.4e-129 466.1 356 67.4
PGR042G1365 Punica granatum HOM05D005261 ORTHO05D006180 4.2e-129 465.3 324 72.5
Glyma.06G107100 Glycine max HOM05D005261 ORTHO05D006180 5.4e-129 464.9 357 66.9
MELO3C008135.2 Cucumis melo HOM05D005261 ORTHO05D006180 1.6e-128 463.4 353 66.0
Phvul.009G027100 Phaseolus vulgaris HOM05D005261 ORTHO05D006180 2.7e-128 462.6 357 67.2
ClCG11G007980 Citrullus lanatus HOM05D005261 ORTHO05D006180 6.0e-128 461.5 345 67.8
EL10Ac1g01697 Beta vulgaris HOM05D005261 ORTHO05D006180 7.8e-128 461.1 351 67.2
arahy.Tifrunner.gnm1.ann1.S5D643 Arachis hypogaea HOM05D005261 ORTHO05D006180 1.9e-126 456.4 321 71.0
arahy.Tifrunner.gnm1.ann1.232HHD Arachis hypogaea HOM05D005261 ORTHO05D006180 3.3e-126 455.7 321 71.0
PSO447G0033 Papaver somniferum HOM05D005261 ORTHO05D006180 3.3e-126 455.7 350 65.4
HanXRQChr02g0043751 Helianthus annuus HOM05D005261 ORTHO05D006180 7.3e-126 454.5 326 70.6
SGA_v2.0_scaffold12G05968 Striga asiatica HOM05D005261 ORTHO05D006180 7.3e-126 454.5 351 65.2
PSO541G3947 Papaver somniferum HOM05D005261 ORTHO05D006180 1.3e-125 453.8 351 65.5
Duzib041G0715 Durio zibethinus HOM05D005261 ORTHO05D006180 2.1e-125 453.0 346 67.9
THA.LOC104813129 Tarenaya hassleriana HOM05D005261 ORTHO05D006180 2.1e-125 453.0 368 65.2
PSO675G0151 Papaver somniferum HOM05D005261 ORTHO05D006180 2.8e-125 452.6 351 65.5
Migut.N03156 Erythranthe guttata HOM05D005261 ORTHO05D006180 3.6e-125 452.2 335 68.4
MBI02_g34268_MAGBIO Magnolia biondii HOM05D005261 ORTHO05D006180 6.2e-125 451.4 331 68.9
Medtr2g460880 Medicago truncatula HOM05D005261 ORTHO05D006180 4.0e-124 448.7 321 70.7
Thhalv10004311m.g Eutrema salsugineum HOM05D005261 ORTHO05D006180 5.3e-124 448.4 360 64.7
CARHR034970 Cardamine hirsuta HOM05D005261 ORTHO05D006180 6.9e-124 448.0 348 66.7
Ah.03g139490 Amaranthus hybridus HOM05D005261 ORTHO05D006180 1.2e-123 447.2 321 67.9
TPR.G16249 Trifolium pratense HOM05D005261 ORTHO05D006180 1.2e-123 447.2 345 66.7
Aa31LG6G9000 Aethionema arabicum HOM05D005261 ORTHO05D006180 2.0e-123 446.4 369 63.1
Sp1g30710 Schrenkiella parvula HOM05D005261 ORTHO05D006180 5.8e-123 444.9 359 64.3
Ca_26314_v3 Cicer arietinum L. HOM05D005261 ORTHO05D006180 9.9e-123 444.1 316 71.2
Sc14g0001090 Simmondsia chinensis HOM05D005261 ORTHO05D006180 1.3e-122 443.7 319 69.6
AL1G50930 Arabidopsis lyrata HOM05D005261 ORTHO05D006180 8.4e-122 441.0 355 64.5
TAR625G1239 Trochodendron aralioides HOM05D005261 ORTHO05D006180 1.4e-121 440.3 328 69.5
BraA05t20051Z Brassica rapa HOM05D005261 ORTHO05D006180 2.4e-121 439.5 331 68.6
Gohir.A06G039700 Gossypium hirsutum HOM05D005261 ORTHO05D006180 2.4e-121 439.5 360 65.8
BcaC02g11530 Brassica carinata HOM05D005261 ORTHO05D006180 3.2e-121 439.1 341 67.7
A08p07950 Brassica napus HOM05D005261 ORTHO05D006180 4.2e-121 438.7 352 65.6
BraA08t32817Z Brassica rapa HOM05D005261 ORTHO05D006180 4.2e-121 438.7 330 68.5
BcaB03g13642 Brassica carinata HOM05D005261 ORTHO05D006180 5.4e-121 438.3 360 62.8
Psat5g135960 Pisum sativum HOM05D005261 ORTHO05D006180 7.1e-121 438.0 327 68.5
Carub.0001s3363 Capsella rubella HOM05D005261 ORTHO05D006180 1.2e-120 437.2 359 64.1
Os02g0750500 Oryza sativa ssp. japonica HOM05D005261 ORTHO05D006180 1.2e-120 437.2 321 67.3
SEGI_02326 Sequoiadendron giganteum HOM05D005261 ORTHO05D006180 1.2e-120 437.2 326 66.3
TWI56G1213 Tripterygium wilfordii HOM05D005261 ORTHO05D006180 2.1e-120 436.4 330 69.4
AT1G36310 Arabidopsis thaliana HOM05D005261 ORTHO05D006180 2.7e-120 436.0 352 65.1
C04p14350 Brassica napus HOM05D005261 ORTHO05D006180 2.7e-120 436.0 339 68.1
Lj1g0011675 Lotus japonicus HOM05D005261 ORTHO05D006180 3.5e-120 435.6 356 64.3
BcaC07g37496 Brassica carinata HOM05D005261 ORTHO05D006180 6.0e-120 434.9 340 65.0
BolC8t47816H Brassica oleracea HOM05D005261 ORTHO05D006180 6.0e-120 434.9 340 65.0
A05p11060 Brassica napus HOM05D005261 ORTHO05D006180 3.0e-119 432.6 327 68.5
unitig_22.g6794 Utricularia gibba HOM05D005261 ORTHO05D006180 3.0e-119 432.6 318 67.9
Zm00001eb255040 Zea mays HOM05D005261 ORTHO05D006180 4.3e-118 428.7 337 63.5
Lsat_1_v5_gn_1_3980 Lactuca sativa HOM05D005261 ORTHO05D006180 5.6e-118 428.3 341 62.5
CDE02G3063 Ceratophyllum demersum HOM05D005261 ORTHO05D006180 2.1e-117 426.4 329 66.6
Nn5g28978 Nelumbo nucifera HOM05D005261 ORTHO05D006180 1.1e-116 424.1 328 68.6
BolC4t23021H Brassica oleracea HOM05D005261 ORTHO05D006180 2.4e-116 422.9 332 68.1
Oeu020872.1 Olea europaea HOM05D005261 ORTHO05D006180 1.2e-115 420.6 314 68.5
HPP92_001925 Vanilla planifolia HOM05D005261 ORTHO05D006180 2.4e-113 412.9 328 62.2
Potri.002G091300 Populus trichocarpa HOM05D005261 ORTHO05D006180 1.2e-112 410.6 379 59.6
AUR62036786 Chenopodium quinoa HOM05D005261 ORTHO05D006180 5.6e-110 401.7 289 70.2
SalBow8G1448 Salvia bowleyana HOM05D005261 ORTHO05D006180 5.6e-110 401.7 385 55.1
SHI24797 Sapria himalayana HOM05D000002 ORTHO05D000001 7.4e-110 401.4 350 60.3
AUR62033704 Chenopodium quinoa HOM05D005261 ORTHO05D006180 9.6e-110 401.0 291 69.1
ATR0564G365 Amborella trichopoda HOM05D005261 ORTHO05D006180 4.0e-108 395.6 305 64.6
AUR62034370 Chenopodium quinoa HOM05D005261 ORTHO05D006180 1.2e-107 394.0 292 67.1
AUR62022337 Chenopodium quinoa HOM05D005261 ORTHO05D006180 4.5e-107 392.1 292 66.8
Mapoly0189s0001 Marchantia polymorpha HOM05D005261 ORTHO05D006180 1.0e-106 391.0 360 56.4
AagrBONN_evm.TU.Sc2ySwM_228.1177 Anthoceros agrestis HOM05D005261 ORTHO05D006180 2.5e-105 386.3 323 58.8
Pp3c8_16200 Physcomitrium patens HOM05D005261 ORTHO05D006180 1.6e-101 373.6 365 54.5
SMO361G0461 Selaginella moellendorffii HOM05D005261 ORTHO05D006180 8.2e-101 371.3 318 58.2
SHI53236 Sapria himalayana HOM05D005261 ORTHO05D006180 4.2e-97 359.0 354 55.6
Lalb_Chr17g0344051 Lupinus albus HOM05D005261 ORTHO05D006180 7.9e-88 328.2 234 70.5
Hma1.2p1_0276F.1_g111370 Hydrangea macrophylla HOM05D005261 ORTHO05D006180 4.4e-86 322.4 237 69.6
SHI35611 Sapria himalayana HOM05D005261 ORTHO05D006180 5.7e-86 322.0 287 59.9
Lj3C845T19 Lonicera japonica HOM05D005261 ORTHO05D006180 1.7e-85 320.5 216 74.1
ECA247G1584 Erigeron canadensis HOM05D000230 ORTHO05D006180 1.9e-81 307.0 254 61.4
CBR_g15981 Chara braunii HOM05D005261 ORTHO05D006180 7.0e-76 288.5 338 46.2
COL.COLO4_16503 Corchorus olitorius HOM05D005261 ORTHO05D006180 5.5e-65 252.3 209 65.6
SHI34852 Sapria himalayana HOM05D005261 ORTHO05D006180 2.0e-59 233.8 313 45.7
SHI34844 Sapria himalayana HOM05D005261 ORTHO05D006180 2.3e-55 220.3 304 45.7
SHI20620 Sapria himalayana HOM05D005261 ORTHO05D006180 1.2e-54 218.0 282 46.5
PRCOL_00005291 Prasinoderma coloniale HOM05D005261 ORTHO05D006180 6.3e-53 212.2 318 40.3
SHI43763 Sapria himalayana HOM05D005261 ORTHO05D006180 1.2e-48 198.0 140 67.9
SHI46120 Sapria himalayana HOM05D005261 ORTHO05D006180 5.2e-47 192.6 140 67.1
SHI53472 Sapria himalayana HOM05D005261 ORTHO05D006180 2.2e-45 187.2 182 55.5
Rhsim10G0118000 Rhododendron simsii HOM05D005261 ORTHO05D006180 3.9e-42 176.4 185 54.6
SHI52923 Sapria himalayana HOM05D005261 ORTHO05D006180 6.6e-42 175.6 182 53.3
SHI32317 Sapria himalayana HOM05D005261 ORTHO05D006180 1.1e-41 174.9 307 37.5
Oeu017307.1 Olea europaea HOM05D005261 ORTHO05D006180 1.2e-40 171.4 134 68.7
Cre04.g224002 Chlamydomonas reinhardtii HOM05D005261 ORTHO05D006180 2.9e-37 160.2 167 48.5
SHI54958 Sapria himalayana HOM05D005261 ORTHO05D006180 8.3e-37 158.7 114 69.3
PGSC0003DMG401027564 Solanum tuberosum HOM05D001663 ORTHO05D003186 2.1e-35 154.1 76 96.1
SHI53189 Sapria himalayana HOM05D005261 ORTHO05D006180 9.5e-33 145.2 182 50.5
SHI49977 Sapria himalayana HOM05D005261 ORTHO05D006180 2.1e-32 144.1 171 49.1
MCO14G461 Micromonas commoda HOM05D005261 ORTHO05D006180 2.3e-31 140.6 329 31.9
SHI49044 Sapria himalayana HOM05D005261 ORTHO05D006180 1.1e-25 121.7 125 53.6
Rhsim13G0124000 Rhododendron simsii HOM05D005261 ORTHO05D006180 4.7e-24 116.3 188 42.6
SHI51067 Sapria himalayana HOM05D005261 ORTHO05D006180 1.3e-21 108.2 139 45.3
Lj3A845G93 Lonicera japonica HOM05D005261 ORTHO05D006180 6.4e-21 105.9 55 87.3
SHI52089 Sapria himalayana HOM05D005261 ORTHO05D006180 4.2e-20 103.2 140 43.6
SHI51747 Sapria himalayana HOM05D005261 ORTHO05D006180 6.0e-19 99.4 140 42.1
SHI41608 Sapria himalayana HOM05D005261 ORTHO05D006180 3.3e-17 93.6 140 42.9
SHI50342 Sapria himalayana HOM05D005261 ORTHO05D006180 2.1e-11 74.3 65 63.1
ClCG11G007990 Citrullus lanatus HOM05D005261 ORTHO05D006180 4.0e-07 60.1 32 71.9


User provided reference genes

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