Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 2.2e-94 349.0 178 100.0
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 2.1e-65 252.7 145 90.3
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.1e-64 250.4 145 89.0
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.1e-64 250.4 145 89.0
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.1e-64 250.4 145 89.0
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 4.9e-46 188.3 119 81.5
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.4e-40 169.5 119 72.3
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.1e-37 160.6 131 64.1
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 2.5e-37 159.5 116 67.2
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 4.6e-36 155.2 130 59.2
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 6.0e-36 154.8 116 67.2
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 8.7e-35 151.0 125 60.0
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 8.7e-35 151.0 117 63.2
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 1.9e-34 149.8 117 59.8
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 3.3e-34 149.1 115 62.6
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 4.3e-34 148.7 116 62.9
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 5.7e-34 148.3 116 62.1
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 5.7e-34 148.3 116 61.2
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 5.7e-34 148.3 110 65.5
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 9.7e-34 147.5 118 66.9
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 9.7e-34 147.5 116 62.9
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.6e-33 146.7 128 55.5
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 2.8e-33 146.0 122 58.2
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 4.8e-33 145.2 112 63.4
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 6.3e-33 144.8 110 60.9
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 6.3e-33 144.8 124 57.3
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.1e-32 144.1 119 61.3
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.4e-32 143.7 115 59.1
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.8e-32 143.3 112 63.4
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.1e-32 142.1 116 59.5
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 5.3e-32 141.7 116 56.9
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-31 140.2 119 53.8
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 2.6e-31 139.4 125 56.8
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 2.6e-31 139.4 123 53.7
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 4.5e-31 138.7 128 53.1
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 5.9e-31 138.3 119 55.5
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.0e-30 137.5 119 58.8
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.7e-30 136.7 125 51.2
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.7e-30 136.7 119 52.1
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.2e-30 136.3 122 51.6
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 2.2e-30 136.3 113 58.4
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 2.9e-30 136.0 122 51.6
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 2.9e-30 136.0 138 50.7
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 2.9e-30 136.0 132 53.8
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 3.8e-30 135.6 117 55.6
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.8e-30 135.6 118 55.1
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 3.8e-30 135.6 126 51.6
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 5.0e-30 135.2 116 56.9
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.5e-30 134.4 119 54.6
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 8.5e-30 134.4 120 56.7
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 8.5e-30 134.4 122 52.5
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 8.5e-30 134.4 127 53.5
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.4e-29 133.7 117 52.1
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.9e-29 133.3 115 57.4
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 2.5e-29 132.9 123 54.5
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 2.5e-29 132.9 120 56.7
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 7.2e-29 131.3 120 53.3
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.6e-28 130.2 121 52.1
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 3.6e-28 129.0 115 52.2
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 3.6e-28 129.0 119 48.7
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 7.9e-28 127.9 120 54.2
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.0e-27 127.5 109 54.1
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.3e-27 127.1 118 54.2
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.8e-27 126.7 114 54.4
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.3e-27 126.3 120 54.2
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.3e-27 126.3 119 50.4
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 3.0e-27 125.9 110 54.5
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 3.9e-27 125.6 116 49.1
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.5e-26 123.6 111 51.4
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 5.7e-26 121.7 124 47.6
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 2.2e-25 119.8 114 48.2
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.4e-24 116.3 117 51.3
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 2.4e-24 116.3 128 44.5
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 5.3e-24 115.2 123 46.3
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 6.9e-24 114.8 123 46.3
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 6.9e-24 114.8 123 46.3
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 6.9e-24 114.8 123 46.3
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 6.9e-24 114.8 123 46.3
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.5e-23 113.6 103 52.4
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 2.6e-23 112.8 121 46.3
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 4.5e-23 112.1 114 45.6
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 4.5e-23 112.1 117 48.7
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 4.5e-23 112.1 123 45.5
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 4.5e-23 112.1 85 61.2
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.0e-22 110.9 117 47.0
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.3e-22 110.5 114 44.7
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.7e-22 110.2 117 50.4
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.7e-22 110.2 85 60.0
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 2.2e-22 109.8 117 47.9
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.2e-22 109.8 115 43.5
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 6.5e-22 108.2 119 47.1
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 6.5e-22 108.2 123 43.9
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 8.5e-22 107.8 103 50.5
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 8.5e-22 107.8 103 50.5
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 2.5e-21 106.3 116 50.9
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 3.2e-21 105.9 114 44.7
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 5.5e-21 105.1 111 48.6
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 7.2e-21 104.8 128 45.3
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-20 104.0 142 37.3
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.6e-20 103.6 137 38.0
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.6e-20 103.6 119 47.1
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.1e-20 103.2 97 51.5
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 6.1e-20 101.7 146 43.2
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.9e-20 101.3 110 42.7
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 1.0e-19 100.9 153 36.6
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 1.0e-19 100.9 142 38.0
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 3.0e-19 99.4 105 44.8
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.0e-19 99.4 143 35.7
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 3.9e-19 99.0 108 40.7
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 3.9e-19 99.0 108 44.4
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 2.6e-18 96.3 114 43.0
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 5.7e-18 95.1 104 41.3
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 7.4e-18 94.7 126 35.7
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 9.7e-18 94.4 123 39.8
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 9.7e-18 94.4 131 38.9
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 2.2e-17 93.2 111 44.1
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 2.8e-17 92.8 106 44.3
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.4e-16 90.5 109 42.2
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.4e-16 89.7 114 42.1
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 4.1e-16 89.0 123 39.0
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 1.4e-13 80.5 114 46.5
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.9e-13 80.1 108 37.0
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 3.6e-12 75.9 65 52.3
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.3e-11 73.2 77 49.4
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 3.0e-11 72.8 108 39.8
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.7e-11 71.6 71 45.1
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.7e-09 67.0 86 39.5
Sopen05g030250 Solanum pennellii HOM05D009740 ORTHO05D012702 1.7e-09 67.0 34 91.2
Sopen06g011350 Solanum pennellii HOM05D000017 ORTHO05D009185 1.7e-09 67.0 34 91.2
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.1e-08 64.3 75 41.3
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.1e-08 64.3 75 41.3
Sopen05g014020 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-08 63.5 34 85.3
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 5.9e-07 58.5 94 35.1


User provided reference genes

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