Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 7.6e-54 213.4 95 100.0
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 2.2e-48 195.3 98 90.8
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 1.8e-42 175.6 95 83.2
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 1.1e-41 172.9 99 79.8
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 4.4e-41 171.0 99 77.8
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 2.2e-37 158.7 101 75.2
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 7.7e-30 133.7 97 69.1
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 7.5e-25 117.1 97 58.8
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 3.7e-24 114.8 88 56.8
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.1e-23 113.2 97 57.7
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 1.1e-23 113.2 95 56.8
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.8e-23 112.5 100 57.0
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 3.1e-23 111.7 100 57.0
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 4.1e-23 111.3 100 60.0
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 5.3e-23 110.9 92 58.7
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 1.3e-21 106.3 100 57.0
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 1.3e-21 106.3 101 56.4
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 2.2e-21 105.5 102 55.9
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 3.8e-21 104.8 103 54.4
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 3.8e-21 104.8 95 54.7
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 3.8e-21 104.8 100 51.0
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 8.5e-21 103.6 100 56.0
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 3.2e-20 101.7 107 49.5
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 4.2e-20 101.3 103 54.4
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 5.5e-20 100.9 100 49.0
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 9.4e-20 100.1 107 50.5
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 9.4e-20 100.1 95 51.6
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 9.4e-20 100.1 98 55.1
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 1.6e-19 99.4 105 52.4
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 2.1e-19 99.0 110 47.3
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 3.6e-19 98.2 105 49.5
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 8.0e-19 97.1 111 44.1
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 8.0e-19 97.1 96 50.0
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 1.4e-18 96.3 96 46.9
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 1.8e-18 95.9 97 53.6
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.8e-18 95.9 97 53.6
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 1.8e-18 95.9 102 52.0
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 1.8e-18 95.9 89 52.8
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 2.3e-18 95.5 101 46.5
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 2.3e-18 95.5 96 46.9
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 3.0e-18 95.1 94 52.1
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 5.2e-18 94.4 85 56.5
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 6.8e-18 94.0 102 52.0
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.2e-17 93.2 97 51.5
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 1.2e-17 93.2 111 45.0
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.5e-17 92.8 101 49.5
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 2.0e-17 92.4 94 48.9
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 3.4e-17 91.7 97 52.6
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 7.5e-17 90.5 94 48.9
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 7.5e-17 90.5 112 44.6
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 9.8e-17 90.1 92 51.1
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 9.8e-17 90.1 92 51.1
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 1.7e-16 89.4 94 48.9
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 2.2e-16 89.0 97 51.5
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 2.2e-16 89.0 89 50.6
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 4.8e-16 87.8 94 48.9
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 1.4e-15 86.3 97 45.4
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 1.8e-15 85.9 93 47.3
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 4.1e-15 84.7 109 46.8
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.7e-13 79.3 57 63.2
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 3.8e-13 78.2 102 46.1
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 6.5e-13 77.4 101 47.5
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 1.1e-12 76.6 101 42.6
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 2.5e-12 75.5 102 45.1
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 2.5e-12 75.5 102 45.1
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 3.2e-12 75.1 90 43.3
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 3.2e-12 75.1 109 44.0
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 4.2e-12 74.7 102 45.1
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 4.2e-12 74.7 102 45.1
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 1.6e-11 72.8 103 43.7
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 2.8e-11 72.0 100 42.0
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 2.8e-11 72.0 106 41.5
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 8.0e-11 70.5 102 43.1
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 5.2e-10 67.8 45 64.4
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 8.8e-10 67.0 46 67.4
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 5.7e-09 64.3 81 38.3
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 1.7e-08 62.8 46 56.5
MSTRG.813 Avicennia marina HOM05D002803 ORTHO05D003089 3.7e-08 61.6 62 50.0
MSTRG.2266 Avicennia marina HOM05D002803 ORTHO05D003089 1.8e-07 59.3 99 36.4
Cc11_g10690 Coffea canephora HOM05D002803 ORTHO05D003089 4.1e-07 58.2 50 48.0
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 4.1e-07 58.2 49 55.1
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 4.1e-07 58.2 71 38.0
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 5.4e-07 57.8 61 42.6
Ah.02g127220 Amaranthus hybridus HOM05D002803 ORTHO05D003089 5.4e-07 57.8 93 34.4
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 7.0e-07 57.4 64 46.9
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 7.0e-07 57.4 65 41.5
EL10Ac6g14513 Beta vulgaris HOM05D002803 ORTHO05D003089 9.2e-07 57.0 56 48.2
SGA_v2.0_scaffold59G20630 Striga asiatica HOM05D002803 ORTHO05D003089 9.2e-07 57.0 111 35.1
Ah.03g137920 Amaranthus hybridus HOM05D002803 ORTHO05D003089 1.2e-06 56.6 47 55.3
Nitab4.5_0000221g0090 Nicotiana tabacum HOM05D002803 ORTHO05D003089 1.2e-06 56.6 118 33.9
Peaxi162Scf00367g00712 Petunia axillaris HOM05D002803 ORTHO05D003089 1.2e-06 56.6 98 34.7
Nitab4.5_0007199g0010 Nicotiana tabacum HOM05D002803 ORTHO05D003089 1.6e-06 56.2 118 33.9
Oeu044623.1 Olea europaea HOM05D002803 ORTHO05D003089 2.0e-06 55.8 42 57.1
SGA_v2.0_scaffold16G07882 Striga asiatica HOM05D002803 ORTHO05D003089 2.0e-06 55.8 46 52.2
Dinv16513 Davidia involucrata HOM05D002803 ORTHO05D003089 2.7e-06 55.5 40 55.0
PSO135G0167 Papaver somniferum HOM05D002803 ORTHO05D003089 2.7e-06 55.5 42 52.4
ATR0053G026 Amborella trichopoda HOM05D002803 ORTHO05D003089 3.5e-06 55.1 62 40.3
Haze_17431 Corylus avellana HOM05D002803 ORTHO05D003089 3.5e-06 55.1 60 40.0
Cfa018638 Carpinus fangiana HOM05D002803 ORTHO05D003089 4.5e-06 54.7 40 55.0
Sabra10G0099500 Salix brachista HOM05D002803 ORTHO05D003089 4.5e-06 54.7 46 52.2
AUR62007738 Chenopodium quinoa HOM05D002803 ORTHO05D003089 5.9e-06 54.3 50 50.0
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 5.9e-06 54.3 59 42.4
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 5.9e-06 54.3 55 41.8
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 7.8e-06 53.9 43 51.2
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 7.8e-06 53.9 43 51.2
PSO017G4670 Papaver somniferum HOM05D002803 ORTHO05D003089 7.8e-06 53.9 48 47.9
PSO478G0765 Papaver somniferum HOM05D002803 ORTHO05D003089 7.8e-06 53.9 48 47.9


User provided reference genes

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