Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 4.9e-45 184.1 93 100.0
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 3.6e-40 167.9 86 97.7
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 6.2e-40 167.2 86 97.7
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 3.1e-39 164.9 90 90.0
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 5.4e-36 154.1 85 88.2
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 1.2e-32 142.9 83 83.1
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 2.1e-32 142.1 90 76.7
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 6.2e-32 140.6 79 86.1
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.4e-31 139.4 90 73.3
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 6.8e-31 137.1 84 82.1
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 5.8e-30 134.0 77 84.4
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.7e-29 132.5 92 70.7
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 3.7e-29 131.3 86 75.6
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 4.9e-29 131.0 86 74.4
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 6.4e-29 130.6 83 77.1
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 6.4e-29 130.6 86 70.9
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 1.1e-28 129.8 80 77.5
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 1.4e-28 129.4 78 78.2
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 1.4e-28 129.4 78 79.5
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.9e-28 129.0 86 69.8
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 2.4e-28 128.6 78 78.2
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 2.4e-28 128.6 87 72.4
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 2.4e-28 128.6 78 79.5
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 3.2e-28 128.3 88 69.3
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 4.1e-28 127.9 78 78.2
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 4.1e-28 127.9 78 79.5
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 5.4e-28 127.5 83 75.9
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 5.4e-28 127.5 82 73.2
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 7.1e-28 127.1 76 80.3
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 7.1e-28 127.1 79 75.9
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 7.1e-28 127.1 88 68.2
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 9.2e-28 126.7 80 76.2
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 9.2e-28 126.7 76 80.3
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 1.2e-27 126.3 86 70.9
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 2.1e-27 125.6 78 76.9
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 2.1e-27 125.6 88 65.9
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 2.1e-27 125.6 76 80.3
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 2.7e-27 125.2 77 79.2
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 2.7e-27 125.2 78 78.2
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 3.5e-27 124.8 88 65.9
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 3.5e-27 124.8 75 77.3
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 3.5e-27 124.8 78 78.2
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 4.6e-27 124.4 76 81.6
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 4.6e-27 124.4 76 77.6
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 4.6e-27 124.4 76 82.9
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 4.6e-27 124.4 81 71.6
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 4.6e-27 124.4 78 75.6
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 4.6e-27 124.4 82 73.2
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 6.0e-27 124.0 75 78.7
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 6.0e-27 124.0 88 65.9
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 6.0e-27 124.0 91 65.9
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 6.0e-27 124.0 88 65.9
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.0e-27 124.0 78 74.4
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 7.8e-27 123.6 88 67.0
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 7.8e-27 123.6 88 65.9
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 7.8e-27 123.6 85 71.8
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 7.8e-27 123.6 90 66.7
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 7.8e-27 123.6 80 73.8
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 1.0e-26 123.2 76 78.9
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.0e-26 123.2 76 77.6
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 1.3e-26 122.9 86 67.4
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 1.7e-26 122.5 76 77.6
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.7e-26 122.5 76 77.6
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 1.7e-26 122.5 76 77.6
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 1.7e-26 122.5 76 77.6
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 2.3e-26 122.1 76 75.0
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 2.3e-26 122.1 86 66.3
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 2.3e-26 122.1 77 75.3
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 2.3e-26 122.1 75 74.7
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 2.3e-26 122.1 77 75.3
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.3e-26 122.1 77 75.3
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 2.3e-26 122.1 79 74.7
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 3.0e-26 121.7 75 76.0
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 3.0e-26 121.7 78 71.8
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 3.0e-26 121.7 77 76.6
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 3.9e-26 121.3 86 67.4
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 5.1e-26 120.9 76 72.4
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 6.6e-26 120.6 76 77.6
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 6.6e-26 120.6 74 79.7
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 6.6e-26 120.6 88 68.2
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 8.6e-26 120.2 88 63.6
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 8.6e-26 120.2 73 78.1
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 8.6e-26 120.2 80 75.0
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 8.6e-26 120.2 86 68.6
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 8.6e-26 120.2 76 81.6
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 8.6e-26 120.2 76 76.3
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 8.6e-26 120.2 76 75.0
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 1.1e-25 119.8 84 71.4
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.5e-25 119.4 76 72.4
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.5e-25 119.4 76 72.4
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.5e-25 119.4 76 71.1
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.5e-25 119.4 76 71.1
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.9e-25 119.0 90 63.3
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 1.9e-25 119.0 76 76.3
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 2.5e-25 118.6 86 66.3
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 3.3e-25 118.2 80 70.0
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 3.3e-25 118.2 88 62.5
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 3.3e-25 118.2 79 70.9
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 3.3e-25 118.2 75 74.7
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 3.3e-25 118.2 88 64.8
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 3.3e-25 118.2 89 65.2
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 5.6e-25 117.5 76 73.7
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 5.6e-25 117.5 91 62.6
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 9.5e-25 116.7 76 73.7
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 1.6e-24 115.9 85 64.7
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 2.1e-24 115.5 82 67.1
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 2.1e-24 115.5 85 63.5
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.6e-24 114.8 74 74.3
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 3.6e-24 114.8 87 65.5
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 4.7e-24 114.4 85 63.5
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 8.1e-24 113.6 76 69.7
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 8.1e-24 113.6 75 74.7
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 1.1e-23 113.2 70 77.1
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.1e-23 113.2 76 71.1
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 1.1e-23 113.2 75 73.3
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.1e-23 113.2 75 73.3
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 3.1e-23 111.7 87 63.2
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 3.1e-23 111.7 85 63.5
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 3.1e-23 111.7 73 74.0
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 4.0e-23 111.3 70 80.0
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 6.8e-23 110.5 76 71.1
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 1.2e-22 109.8 80 70.0
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 2.0e-22 109.0 76 65.8
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.4e-22 108.2 70 72.9
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 7.6e-22 107.1 80 68.8
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 7.6e-22 107.1 79 64.6
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 9.9e-22 106.7 71 73.2
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 3.7e-21 104.8 70 74.3
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 4.9e-21 104.4 73 67.1
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 3.5e-19 98.2 74 62.2
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.0e-18 95.1 59 79.7
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 3.0e-18 95.1 59 79.7
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 2.5e-17 92.0 77 54.5
Pp3c24_20710 Physcomitrium patens HOM05D003476 ORTHO05D004057 2.5e-17 92.0 76 57.9
Pp3c8_24950 Physcomitrium patens HOM05D003476 ORTHO05D004057 2.5e-17 92.0 84 53.6
MBI16_g28612_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 3.3e-17 91.7 54 75.9
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 6.2e-16 87.4 69 60.9
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 1.1e-15 86.7 70 61.4
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 1.8e-15 85.9 90 51.1
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 1.2e-14 83.2 69 56.5
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 1.5e-14 82.8 60 65.0
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 3.4e-14 81.6 51 76.5
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 4.4e-14 81.3 92 47.8
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 9.9e-14 80.1 62 59.7
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 9.9e-14 80.1 49 79.6
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 2.2e-13 79.0 60 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5500 Anthoceros agrestis HOM05D003476 ORTHO05D004057 2.4e-12 75.5 84 45.2
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 4.2e-12 74.7 69 53.6
MBI14_g06613_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 4.2e-12 74.7 85 44.7
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 5.4e-12 74.3 61 57.4
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 4.6e-11 71.2 61 54.1
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 4.6e-11 71.2 61 54.1
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 3.0e-10 68.6 41 78.0
Hund03462 Selenicereus undatus HOM05D003476 ORTHO05D004057 1.1e-09 66.6 49 65.3
Migut.F01424 Erythranthe guttata HOM05D003476 ORTHO05D004057 4.3e-09 64.7 42 71.4
Cre12.g524200 Chlamydomonas reinhardtii HOM05D003476 ORTHO05D004057 2.1e-08 62.4 73 43.8
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 2.8e-08 62.0 40 70.0
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 3.6e-08 61.6 35 85.7
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 8.1e-08 60.5 43 72.1
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 1.1e-07 60.1 44 68.2
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 1.4e-07 59.7 40 70.0
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 3.1e-07 58.5 40 72.5
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 3.4e-06 55.1 76 43.4
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 3.4e-06 55.1 46 63.0
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 7.6e-06 53.9 35 71.4


User provided reference genes

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