Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 2305.4 1168 100.0
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 2295.8 1168 99.4
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 2120.5 1156 92.5
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 2047.7 1169 89.1
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 2033.5 1199 87.3
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1979.9 1167 87.1
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1868.6 1170 80.9
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1847.0 1187 80.5
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1841.6 1173 80.5
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1839.3 1167 81.2
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1837.8 1173 80.1
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1837.0 1173 80.1
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1813.1 1172 78.8
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1807.7 1171 78.7
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1807.0 1171 78.8
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1803.9 1171 78.9
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1795.4 1172 78.2
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1795.0 1172 78.2
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1793.9 1172 78.2
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1790.8 1172 78.8
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1790.8 1173 77.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1790.8 1172 78.2
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1787.3 1172 78.2
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1786.9 1172 78.2
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1785.4 1169 78.5
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1785.0 1172 78.2
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1782.3 1172 77.8
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1781.1 1182 76.8
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1779.6 1171 78.0
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1778.1 1171 77.9
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1775.0 1179 78.2
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1774.2 1182 77.1
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1773.4 1170 78.3
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1773.4 1172 77.6
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1767.7 1172 77.6
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1764.6 1172 77.5
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1764.2 1172 77.2
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1763.8 1171 77.3
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1758.8 1216 75.0
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1755.3 1220 74.7
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1755.3 1209 75.9
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1755.0 1220 74.6
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1751.5 1171 76.3
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1749.2 1220 74.6
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1748.8 1201 76.5
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1748.8 1172 76.5
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1744.6 1173 76.1
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1738.4 1170 76.2
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1736.5 1170 76.5
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1734.9 1208 74.5
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1734.5 1208 74.6
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1733.4 1176 76.4
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1176 76.5
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1728.8 1176 76.4
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1728.4 1195 74.9
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1728.4 1225 72.9
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1724.9 1196 74.7
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1723.4 1169 75.9
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1721.4 1212 75.0
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1718.4 1176 75.3
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1718.0 1173 74.9
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1715.7 1172 75.5
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1713.7 1169 76.4
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1712.6 1168 76.1
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1709.5 1170 76.3
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1706.4 1170 75.2
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1705.6 1177 75.3
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1703.7 1172 74.9
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1703.3 1171 74.9
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1703.0 1210 74.3
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1701.0 1174 75.0
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1701.0 1228 71.8
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1693.3 1174 73.7
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1692.9 1177 74.7
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1686.0 1171 73.7
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1681.0 1172 73.8
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1681.0 1174 73.8
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1675.6 1173 74.3
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1675.2 1231 71.9
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1668.3 1174 74.4
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1662.9 1170 72.6
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1657.1 1205 72.0
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1656.3 1231 70.8
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1656.3 1171 72.6
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1655.6 1172 73.5
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1655.2 1173 74.4
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1654.8 1170 73.2
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1653.3 1179 73.0
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1652.1 1230 71.0
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1651.0 1171 72.9
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1646.3 1171 72.8
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1645.9 1171 72.8
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1174 72.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1171 73.0
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1640.2 1177 72.7
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1637.9 1174 72.2
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1637.9 1175 72.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1629.0 1173 72.0
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1628.6 1182 72.4
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1626.7 1178 72.3
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1625.5 1175 72.4
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1625.1 1178 72.0
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1609.7 1171 72.8
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1605.9 1150 72.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1605.9 1189 71.9
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1597.0 1072 76.8
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1593.2 1182 70.0
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1588.2 1099 75.1
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1586.2 1178 70.8
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1581.6 1174 70.9
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1579.3 1175 71.1
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1567.4 1174 69.5
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1565.4 1175 69.8
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1561.6 1149 71.5
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1550.4 1176 68.6
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1527.3 1171 68.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1521.9 1176 68.0
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1506.1 1173 69.1
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1502.3 947 81.5
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1498.4 1106 71.4
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1430.2 945 77.7
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1398.6 1181 65.1
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1376.3 885 80.2
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1350.1 1033 70.0
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1304.3 946 72.5
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1293.5 966 70.2
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1276.2 956 70.7
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1259.6 1171 59.6
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1229.9 976 69.5
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1211.4 969 69.0
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1146.0 830 72.5
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1141.7 807 74.1
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1130.9 814 72.6
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1083.2 1166 55.6
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 2.3e-309 1065.8 806 70.0
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.4e-290 1002.7 1171 48.5
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 6.1e-286 988.0 723 72.1
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 7.4e-284 981.1 1195 46.2
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.7e-278 962.6 540 88.7
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.5e-252 877.1 717 66.7
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.2e-238 830.9 603 72.6
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 7.4e-191 672.2 431 78.4
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 8.2e-166 589.0 360 81.4
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.3e-147 527.7 307 83.4
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.8e-142 510.8 895 40.8
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 6.0e-132 476.5 304 76.6
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 6.0e-132 476.5 304 76.6
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.6e-124 450.3 619 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.2e-116 425.6 806 34.5
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 3.9e-115 420.6 285 74.7
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 2.3e-107 394.8 1340 28.5
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 3.3e-98 364.4 228 76.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 4.3e-90 337.4 187 88.2
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.7e-86 325.5 197 82.2
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.5e-85 321.6 510 42.2
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 3.1e-80 304.7 182 82.4
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 4.5e-79 300.8 278 60.1
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 2.9e-78 298.1 205 72.2
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 4.8e-73 280.8 142 98.6
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 4.3e-66 257.7 207 67.6
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.1e-64 253.1 256 59.8
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 3.3e-58 231.5 186 64.0
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 3.9e-51 208.0 132 81.8
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.0e-46 193.4 118 83.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.1e-45 189.9 125 76.0
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.5e-45 188.7 152 67.8
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 9.4e-37 160.2 92 89.1
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 4.7e-28 131.3 86 75.6
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 4.7e-28 131.3 91 70.3
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 4.7e-28 131.3 91 70.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 7.8e-23 114.0 78 74.4
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 8.9e-19 100.5 96 55.2
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 2.0e-18 99.4 59 78.0
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 4.4e-18 98.2 83 61.4
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 3.7e-17 95.1 47 85.1
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 3.2e-16 92.0 78 64.1
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.6e-12 79.7 118 45.8
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 8.6e-06 57.4 62 51.6


User provided reference genes

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