Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 3.7e-75 285.0 168 100.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.2e-71 271.6 169 97.0
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.9e-68 262.7 169 92.9
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.2e-62 243.4 168 88.7
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.9e-58 227.6 176 83.0
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-54 216.9 173 79.2
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 2.1e-54 216.1 171 77.2
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 6.7e-53 211.1 174 77.6
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.1e-52 210.3 175 78.9
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.3e-52 208.8 176 72.2
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.8e-51 205.7 175 77.1
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 8.2e-51 204.1 189 70.9
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 1.2e-49 200.3 184 70.1
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.5e-49 199.9 171 68.4
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.5e-49 199.9 171 69.0
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 3.4e-49 198.7 171 67.8
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.7e-48 196.4 166 73.5
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.2e-48 196.1 171 71.9
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 6.5e-48 194.5 172 77.3
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 6.5e-48 194.5 168 76.8
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.1e-47 193.7 180 76.1
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.9e-47 193.0 172 67.4
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 2.5e-47 192.6 181 72.4
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 2.5e-47 192.6 189 63.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.5e-47 192.6 188 63.8
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 4.2e-47 191.8 191 69.1
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 5.5e-47 191.4 191 68.1
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 7.2e-47 191.0 191 69.6
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 9.4e-47 190.7 184 60.3
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 2.1e-46 189.5 191 63.4
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 2.7e-46 189.1 190 68.9
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 3.6e-46 188.7 170 76.5
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 3.6e-46 188.7 170 76.5
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 3.6e-46 188.7 192 60.4
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 4.7e-46 188.3 189 61.9
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 4.7e-46 188.3 180 69.4
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.7e-46 188.3 173 71.1
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 4.7e-46 188.3 176 71.0
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.8e-45 186.4 181 63.5
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 2.3e-45 186.0 191 67.5
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 3.9e-45 185.3 181 61.3
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 6.7e-45 184.5 168 73.8
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 6.7e-45 184.5 169 71.6
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 8.8e-45 184.1 175 67.4
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 8.8e-45 184.1 181 59.7
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.1e-44 183.7 177 69.5
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.5e-44 183.3 178 64.6
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 3.3e-44 182.2 180 61.7
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 3.3e-44 182.2 192 62.0
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 3.3e-44 182.2 192 68.2
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 5.7e-44 181.4 170 72.9
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 7.4e-44 181.0 172 70.3
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.3e-43 180.3 173 72.8
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.3e-43 180.3 183 59.6
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.3e-43 180.3 183 67.2
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.7e-43 179.9 188 66.0
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.7e-43 179.9 190 60.0
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.7e-43 179.9 183 67.2
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.7e-43 179.9 182 64.8
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 2.2e-43 179.5 168 67.9
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 2.2e-43 179.5 173 71.7
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.2e-43 179.5 186 67.7
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.8e-43 179.1 188 67.6
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.8e-43 179.1 188 63.8
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 2.8e-43 179.1 185 65.4
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 2.8e-43 179.1 181 67.4
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 3.7e-43 178.7 174 73.0
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 3.7e-43 178.7 188 67.0
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 3.7e-43 178.7 180 66.1
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 4.8e-43 178.3 168 67.3
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 4.8e-43 178.3 193 66.3
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.8e-43 178.3 184 58.7
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 8.2e-43 177.6 188 67.0
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.1e-42 177.2 183 62.3
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.4e-42 176.8 180 70.0
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.4e-42 176.8 192 63.5
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.4e-42 176.8 182 65.9
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.8e-42 176.4 198 61.6
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 2.4e-42 176.0 180 67.2
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 2.4e-42 176.0 180 66.7
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 3.1e-42 175.6 198 61.1
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 3.1e-42 175.6 175 63.4
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 4.1e-42 175.3 182 67.0
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 4.1e-42 175.3 187 65.2
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.1e-42 175.3 182 64.8
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 7.0e-42 174.5 173 72.8
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 7.0e-42 174.5 182 62.1
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 9.1e-42 174.1 193 65.8
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 9.1e-42 174.1 188 65.4
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.6e-41 173.3 193 64.2
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.0e-41 172.9 191 66.0
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 4.5e-41 171.8 186 65.6
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.3e-40 170.2 200 55.5
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.2e-40 169.5 187 65.8
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.2e-40 169.5 147 73.5
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 2.2e-40 169.5 181 65.7
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.5e-40 167.5 138 76.8
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.1e-39 167.2 158 72.8
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.9e-39 166.4 176 64.8
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.5e-39 166.0 187 64.7
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 2.5e-39 166.0 182 61.5
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.5e-39 166.0 148 70.3
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 2.5e-39 166.0 180 64.4
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 3.2e-39 165.6 182 67.6
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.2e-39 165.6 183 62.8
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 4.2e-39 165.2 169 68.0
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.2e-38 163.7 176 63.1
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.6e-38 163.3 95 85.3
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 2.7e-38 162.5 178 64.6
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 3.6e-38 162.2 191 59.7
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 8.0e-38 161.0 193 62.7
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.4e-37 160.2 215 56.7
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.8e-37 159.8 174 66.7
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 4.0e-37 158.7 190 51.1
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 4.0e-37 158.7 84 91.7
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 4.4e-36 155.2 190 57.4
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 5.7e-36 154.8 174 54.6
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.7e-35 153.3 173 60.1
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.4e-34 150.2 171 53.8
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 9.1e-34 147.5 87 82.8
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.2e-33 147.1 169 64.5
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.5e-31 140.2 188 45.2
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.2e-30 137.1 138 57.2
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.2e-30 137.1 188 45.2
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.2e-28 130.6 75 84.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.5e-28 130.2 70 87.1
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 3.4e-28 129.0 69 84.1
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 5.4e-26 121.7 146 63.0
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 1.3e-24 117.1 147 60.5
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 3.8e-24 115.5 142 64.8
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 9.4e-23 110.9 65 83.1
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.6e-22 110.2 70 81.4
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 3.6e-22 109.0 111 57.7
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 6.1e-22 108.2 82 62.2
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 6.8e-21 104.8 175 49.7
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 6.3e-19 98.2 80 58.8
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 4.1e-18 95.5 90 53.3
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.6e-17 93.6 82 54.9
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.0e-16 90.9 109 66.1
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 1.5e-15 87.0 133 57.9
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 7.3e-15 84.7 49 85.7
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.5e-12 77.0 169 43.8
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.2e-09 67.4 67 50.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.3e-07 59.3 39 61.5
unitig_749.g13910 Utricularia gibba HOM05D005519 ORTHO05D006423 3.3e-07 59.3 116 40.5


User provided reference genes

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