Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 4.1e-168 594.7 318 100.0
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.2e-166 589.0 318 98.7
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 8.0e-164 580.5 318 97.2
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.6e-156 556.2 318 94.3
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 2.6e-154 548.9 318 92.8
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.3e-153 544.3 318 91.2
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 8.3e-153 543.9 318 91.8
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.1e-152 540.4 318 90.9
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.5e-141 506.5 318 87.1
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.2e-140 503.4 318 86.8
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.5e-133 479.9 281 91.8
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 7.3e-133 477.6 319 79.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.8e-131 471.1 319 79.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 1.5e-130 469.9 318 77.7
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.3e-129 466.8 319 78.1
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.3e-129 466.8 318 76.7
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.3e-129 466.8 318 76.7
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 2.2e-129 466.1 318 77.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 2.9e-129 465.7 318 77.0
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.9e-129 464.9 319 77.7
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 4.1e-128 461.8 318 77.7
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 2.7e-127 459.1 318 76.1
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 7.8e-127 457.6 318 76.1
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 8.6e-126 454.1 318 75.5
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 2.5e-125 452.6 318 75.8
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.5e-125 452.6 319 75.2
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 4.3e-125 451.8 318 75.8
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 2.8e-124 449.1 363 69.1
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.8e-124 449.1 319 74.9
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 3.6e-124 448.7 318 74.2
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 6.2e-124 448.0 319 74.9
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.1e-123 447.2 318 74.8
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.1e-123 447.2 319 75.9
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 4.0e-123 445.3 319 74.6
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 6.8e-123 444.5 318 73.6
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 8.9e-123 444.1 319 74.6
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.5e-122 443.4 318 74.2
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 2.6e-122 442.6 318 74.8
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 5.8e-122 441.4 319 73.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 9.9e-122 440.7 319 74.6
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.3e-121 440.3 319 72.7
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.7e-121 438.7 319 73.4
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 4.9e-121 438.3 318 72.6
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 4.9e-121 438.3 319 74.0
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 4.9e-121 438.3 319 73.4
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 4.9e-121 438.3 318 73.9
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 6.4e-121 438.0 319 74.0
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 8.3e-121 437.6 319 73.0
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.1e-120 437.2 319 73.0
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.4e-120 436.0 319 73.7
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 3.2e-120 435.6 319 72.7
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 7.1e-120 434.5 318 72.3
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 9.2e-120 434.1 318 72.0
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.2e-119 433.7 319 73.0
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.2e-119 433.7 318 73.9
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 2.1e-119 433.0 318 72.6
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.5e-119 432.2 318 72.3
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.5e-119 432.2 319 71.8
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.6e-119 431.8 319 73.0
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.0e-118 430.6 319 71.8
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 1.3e-118 430.3 318 73.3
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.7e-118 429.9 319 72.7
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 3.9e-118 428.7 318 71.4
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.1e-117 427.2 318 71.7
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.9e-117 426.4 319 72.7
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 4.3e-117 425.2 319 72.4
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 7.3e-117 424.5 320 71.2
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 9.5e-117 424.1 318 73.3
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 2.1e-116 422.9 315 70.5
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 2.8e-116 422.5 318 72.3
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 3.6e-116 422.2 318 70.1
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 8.1e-116 421.0 320 71.6
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.4e-115 420.2 318 69.8
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 5.2e-115 418.3 318 70.1
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 6.8e-115 417.9 319 69.9
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 8.9e-115 417.5 318 70.4
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 8.9e-115 417.5 319 70.5
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.6e-114 416.0 319 69.9
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 4.4e-114 415.2 320 69.7
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 5.8e-114 414.8 319 70.2
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 5.8e-114 414.8 319 69.6
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 9.9e-114 414.1 318 70.8
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 9.9e-114 414.1 318 72.0
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.7e-113 413.3 318 69.8
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.8e-113 412.1 318 69.2
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.4e-112 408.3 318 68.6
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-111 407.1 321 67.6
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.9e-109 399.8 318 67.9
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.3e-109 398.7 354 62.4
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.8e-108 396.0 319 69.0
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.8e-108 396.0 320 67.5
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.6e-108 395.6 320 67.2
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 4.7e-108 395.2 319 66.5
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.1e-107 394.0 302 69.9
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.1e-107 394.0 317 65.0
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.1e-107 394.0 321 66.7
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.8e-107 393.3 302 69.5
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 2.4e-107 392.9 302 69.2
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.4e-107 392.9 319 66.1
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 5.2e-107 391.7 294 72.4
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 5.2e-107 391.7 318 67.0
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.6e-106 389.4 305 68.5
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.6e-106 389.4 286 73.4
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 7.6e-106 387.9 280 75.0
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.6e-102 374.8 318 67.9
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 8.7e-102 374.4 320 63.4
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 1.1e-101 374.0 294 68.0
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.9e-101 373.2 294 67.3
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 3.6e-100 369.0 288 68.1
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 4.0e-99 365.5 256 74.2
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.6e-98 362.8 271 70.5
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 5.8e-98 361.7 270 69.6
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 7.1e-96 354.8 391 58.8
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.3e-94 350.5 318 62.3
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.8e-94 350.1 319 61.4
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.3e-94 349.7 265 71.3
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 6.7e-94 348.2 319 63.6
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.8e-92 342.8 320 58.8
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 8.1e-92 341.3 318 64.2
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 5.8e-90 335.1 271 64.9
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 3.2e-88 329.3 242 70.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.8e-84 316.2 231 74.9
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 9.0e-83 311.2 318 56.3
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 8.2e-76 288.1 228 65.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.3e-70 270.0 327 49.2
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.0e-69 266.9 749 31.4
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.3e-65 254.2 314 49.0
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 9.4e-64 248.1 322 44.4
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 2.2e-60 236.9 181 77.3
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.0e-58 230.3 295 47.5
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.3e-52 211.1 192 65.1
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.3e-51 205.7 125 92.8
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.8e-49 199.5 160 71.9
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.6e-47 194.1 150 73.3
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.5e-45 187.6 274 47.4
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 5.5e-40 169.1 109 87.2
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 2.2e-36 157.1 151 60.9
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.1e-35 153.3 121 62.0
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 4.1e-35 152.9 252 40.1
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 8.6e-33 145.2 275 40.7
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 3.3e-32 143.3 313 33.9
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.4e-30 137.9 112 66.1
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 9.8e-29 131.7 91 71.4
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.3e-25 120.6 135 56.3
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 2.3e-25 120.6 93 69.9
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 4.3e-24 116.3 99 60.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.5e-24 115.2 128 59.4
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.2e-21 108.2 89 59.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.4e-21 106.3 111 58.6
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.5e-16 91.3 67 65.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 2.5e-16 90.5 397 26.7
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.0e-14 83.2 57 75.4
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 2.3e-09 67.4 126 36.5
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 5.1e-09 66.2 92 46.7
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 1.8e-06 57.8 90 41.1
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 5.2e-06 56.2 42 59.5


User provided reference genes

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