Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g027680 Solanum pennellii HOM05D006546 ORTHO05D008362 7.8e-200 700.3 358 100.0
Solyc04g071700.3 Solanum lycopersicum HOM05D006546 ORTHO05D008362 8.0e-197 690.3 358 98.9
PGSC0003DMG400006373 Solanum tuberosum HOM05D006546 ORTHO05D008362 1.2e-192 676.4 358 96.1
Nitab4.5_0006961g0030 Nicotiana tabacum HOM05D006546 ORTHO05D008362 3.9e-175 618.2 358 88.0
Nitab4.5_0001649g0020 Nicotiana tabacum HOM05D006546 ORTHO05D008362 4.3e-166 588.2 358 84.6
Lj4A701T20 Lonicera japonica HOM05D006546 ORTHO05D008362 5.1e-151 538.1 354 79.1
Peaxi162Scf00079g02332 Petunia axillaris HOM05D006546 ORTHO05D008362 1.5e-150 536.6 359 78.6
MSTRG.1097 Avicennia marina HOM05D006546 ORTHO05D008362 6.2e-149 531.2 358 76.3
Cc10_g15070 Coffea canephora HOM05D006546 ORTHO05D008362 6.2e-149 531.2 365 75.3
CSS0026250 Camellia sinensis var. sinensis HOM05D006546 ORTHO05D008362 2.0e-147 526.2 363 75.2
SGA_v2.0_scaffold195G40788 Striga asiatica HOM05D006546 ORTHO05D008362 1.7e-146 523.1 366 74.6
CAN.G264.10 Capsicum annuum HOM05D006546 ORTHO05D008362 6.5e-146 521.2 281 91.8
Migut.C00976 Erythranthe guttata HOM05D006546 ORTHO05D008362 1.1e-145 520.4 358 74.9
SalBow7G0432 Salvia bowleyana HOM05D006546 ORTHO05D008362 1.6e-144 516.5 358 74.3
Lsat_1_v5_gn_1_5280 Lactuca sativa HOM05D006546 ORTHO05D008362 3.9e-143 511.9 344 77.0
GSVIVG01034559001 Vitis vinifera HOM05D006546 ORTHO05D008362 3.9e-143 511.9 356 75.6
HanXRQChr04g0115661 Helianthus annuus HOM05D006546 ORTHO05D008362 1.1e-142 510.4 345 77.1
Actinidia17779 Actinidia chinensis HOM05D006546 ORTHO05D008362 1.5e-142 510.0 359 74.7
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 3.3e-142 508.8 302 83.1
Atru.chr13.2063_Atru.chr13.2062 Acer truncatum HOM05D006546 ORTHO05D008362 2.8e-141 505.8 333 77.5
CANSAT25G3312 Cannabis sativa HOM05D006546 ORTHO05D008362 2.8e-141 505.8 337 76.3
MD05G1030000 Malus domestica HOM05D006546 ORTHO05D008362 1.4e-140 503.4 337 77.7
vmacro01645 Vaccinium macrocarpon HOM05D006546 ORTHO05D008362 1.8e-140 503.1 347 74.9
Potri.005G194800 Populus trichocarpa HOM05D006546 ORTHO05D008362 2.4e-140 502.7 317 81.1
Prupe.8G036900 Prunus persica HOM05D006546 ORTHO05D008362 6.9e-140 501.1 335 77.0
arahy.Tifrunner.gnm1.ann1.PKA9SD Arachis hypogaea HOM05D006546 ORTHO05D008362 3.4e-139 498.8 357 71.7
FAN20G1322 Fragaria x ananassa HOM05D006546 ORTHO05D008362 7.6e-139 497.7 317 77.9
CiPaw.16G009700 Carya illinoinensis HOM05D006546 ORTHO05D008362 1.0e-138 497.3 364 70.6
AUR62040584 Chenopodium quinoa HOM05D006546 ORTHO05D008362 1.3e-138 496.9 309 80.3
ECA247G1092 Erigeron canadensis HOM05D006546 ORTHO05D008362 1.7e-138 496.5 315 78.1
VMungo0464G1775 Vigna mungo HOM05D006546 ORTHO05D008362 1.7e-138 496.5 328 76.8
FvH4_2g13270 Fragaria vesca HOM05D006546 ORTHO05D008362 2.9e-138 495.7 317 77.3
Cfa018304 Carpinus fangiana HOM05D006546 ORTHO05D008362 5.0e-138 495.0 366 71.3
Rhsim11G0111500 Rhododendron simsii HOM05D006546 ORTHO05D008362 6.5e-138 494.6 341 75.1
Gorai.002G231100 Gossypium raimondii HOM05D006546 ORTHO05D008362 1.4e-137 493.4 362 70.4
Nn5g28792 Nelumbo nucifera HOM05D006546 ORTHO05D008362 1.6e-136 490.0 371 69.0
TWI34G0343 Tripterygium wilfordii HOM05D006546 ORTHO05D008362 1.6e-136 490.0 363 70.5
Medtr6g037530 Medicago truncatula HOM05D006546 ORTHO05D008362 2.1e-136 489.6 325 76.6
Psat1g100360 Pisum sativum HOM05D006546 ORTHO05D008362 2.1e-136 489.6 368 69.8
Ca_03250_v3 Cicer arietinum L. HOM05D006546 ORTHO05D008362 4.6e-136 488.4 312 78.5
Manes.18G093500 Manihot esculenta HOM05D006546 ORTHO05D008362 4.6e-136 488.4 351 73.2
Haze_17787 Corylus avellana HOM05D006546 ORTHO05D008362 1.0e-135 487.3 367 70.6
PGR042G3407 Punica granatum HOM05D006546 ORTHO05D008362 1.0e-135 487.3 365 70.7
Glyma.16G164900 Glycine max HOM05D006546 ORTHO05D008362 1.8e-135 486.5 332 74.7
Phvul.004G092300 Phaseolus vulgaris HOM05D006546 ORTHO05D008362 1.8e-135 486.5 325 76.0
PSO541G2164 Papaver somniferum HOM05D006546 ORTHO05D008362 5.1e-135 485.0 352 71.6
Thecc.08G155700 Theobroma cacao HOM05D006546 ORTHO05D008362 6.7e-135 484.6 361 69.3
TAR625G0865 Trochodendron aralioides HOM05D006546 ORTHO05D008362 8.7e-135 484.2 362 70.2
Hund17460 Selenicereus undatus HOM05D006546 ORTHO05D008362 1.1e-134 483.8 304 79.3
Sc26g0002400 Simmondsia chinensis HOM05D006546 ORTHO05D008362 1.9e-134 483.0 332 75.9
COL.COLO4_03565 Corchorus olitorius HOM05D006546 ORTHO05D008362 2.5e-134 482.6 363 70.2
FAN15G0764 Fragaria x ananassa HOM05D006546 ORTHO05D008362 2.5e-134 482.6 325 75.4
Lj2g0010381 Lotus japonicus HOM05D006546 ORTHO05D008362 4.3e-134 481.9 365 70.7
Oeu002061.1 Olea europaea HOM05D006546 ORTHO05D008362 7.4e-134 481.1 303 80.2
Cpa.g.sc49.98 Carica papaya HOM05D006546 ORTHO05D008362 2.8e-133 479.2 368 69.0
QL02p037672 Quercus lobata HOM05D006546 ORTHO05D008362 1.4e-132 476.9 314 77.7
MELO3C008332.2 Cucumis melo HOM05D006546 ORTHO05D008362 2.4e-132 476.1 336 72.3
Duzib093G0633 Durio zibethinus HOM05D006546 ORTHO05D008362 2.4e-132 476.1 319 75.2
BraA07t30475Z Brassica rapa HOM05D006546 ORTHO05D008362 4.1e-132 475.3 310 76.1
AT1G76730 Arabidopsis thaliana HOM05D006546 ORTHO05D008362 5.3e-132 474.9 336 72.3
A07p28390 Brassica napus HOM05D006546 ORTHO05D008362 5.3e-132 474.9 310 76.1
Aqoxy6G00397 Aquilegia oxysepala HOM05D006546 ORTHO05D008362 6.9e-132 474.6 360 69.2
AL2G36880 Arabidopsis lyrata HOM05D006546 ORTHO05D008362 9.1e-132 474.2 333 72.7
Aa31LG4G6800 Aethionema arabicum HOM05D006546 ORTHO05D008362 5.9e-131 471.5 345 70.4
CsaV3_6G005120 Cucumis sativus L. HOM05D006546 ORTHO05D008362 7.7e-131 471.1 364 67.6
Sabra05G0148300 Salix brachista HOM05D006546 ORTHO05D008362 7.7e-131 471.1 397 66.5
BcaC08g45513 Brassica carinata HOM05D006546 ORTHO05D008362 1.7e-130 469.9 301 77.1
Carub.0002s2364 Capsella rubella HOM05D006546 ORTHO05D008362 2.2e-130 469.5 320 74.1
C06p31830 Brassica napus HOM05D006546 ORTHO05D008362 2.9e-130 469.2 301 77.4
BolC6t38311H Brassica oleracea HOM05D006546 ORTHO05D008362 2.9e-130 469.2 301 77.4
Sp5g31870 Schrenkiella parvula HOM05D006546 ORTHO05D008362 3.8e-130 468.8 364 67.9
Thhalv10018779m.g Eutrema salsugineum HOM05D006546 ORTHO05D008362 6.5e-130 468.0 313 74.8
QL02p038646 Quercus lobata HOM05D006546 ORTHO05D008362 8.5e-130 467.6 315 76.8
Sed0023841 Sechium edule HOM05D006546 ORTHO05D008362 2.1e-128 463.0 347 68.9
AUR62026675 Chenopodium quinoa HOM05D006546 ORTHO05D008362 2.6e-126 456.1 297 77.1
ATR0584G152 Amborella trichopoda HOM05D006546 ORTHO05D008362 7.4e-126 454.5 360 66.7
BcaB02g07073 Brassica carinata HOM05D006546 ORTHO05D008362 1.4e-124 450.3 285 77.9
EL10Ac1g01586 Beta vulgaris HOM05D006546 ORTHO05D008362 6.9e-124 448.0 348 68.1
Zm00001eb407750 Zea mays HOM05D006546 ORTHO05D008362 1.8e-119 433.3 300 72.0
ClCG08G007080 Citrullus lanatus HOM05D006546 ORTHO05D008362 1.7e-117 426.8 441 54.6
HPP92_004409 Vanilla planifolia HOM05D006546 ORTHO05D008362 1.1e-116 424.1 299 70.6
Mapoly0007s0250 Marchantia polymorpha HOM05D006546 ORTHO05D008362 9.1e-116 421.0 302 70.2
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 1.6e-115 420.2 306 68.6
CBR_g53679 Chara braunii HOM05D006546 ORTHO05D008362 1.6e-115 420.2 307 69.7
Pp3c18_17520 Physcomitrium patens HOM05D006546 ORTHO05D008362 1.3e-114 417.2 321 66.4
MBI19_g24720_MAGBIO Magnolia biondii HOM05D006546 ORTHO05D008362 1.9e-113 413.3 509 49.7
Os12g0168000 Oryza sativa ssp. japonica HOM05D006546 ORTHO05D008362 4.2e-113 412.1 300 69.0
SMO340G0128 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 7.5e-110 401.4 288 69.1
arahy.Tifrunner.gnm1.ann1.AD4V0Z Arachis hypogaea HOM05D006546 ORTHO05D008362 7.2e-105 384.8 458 49.1
Ciclev10001828m.g Citrus clementina HOM05D006546 ORTHO05D008362 2.1e-104 383.3 289 70.2
Cre13.g587450 Chlamydomonas reinhardtii HOM05D006546 ORTHO05D008362 3.5e-99 365.9 305 62.6
Eucgr.F02694 Eucalyptus grandis HOM05D006546 ORTHO05D008362 4.5e-99 365.5 212 84.9
FAN27G2273 Fragaria x ananassa HOM05D006546 ORTHO05D008362 5.4e-92 342.0 217 79.3
MCO03G555 Micromonas commoda HOM05D006546 ORTHO05D008362 4.0e-87 325.9 322 55.3
CsaV3_6G005110 Cucumis sativus L. HOM05D006546 ORTHO05D008362 1.2e-86 324.3 335 55.2
CARHR070270 Cardamine hirsuta HOM05D006546 ORTHO05D008362 4.4e-86 322.4 200 80.0
Dinv41054 Davidia involucrata HOM05D006546 ORTHO05D008362 5.6e-81 305.4 170 89.4
Ah.14g079510 Amaranthus hybridus HOM05D006546 ORTHO05D008362 2.4e-76 290.0 204 74.0
Gohir.A01G197500 Gossypium hirsutum HOM05D006546 ORTHO05D008362 2.4e-76 290.0 246 63.4
Gohir.D01G187700 Gossypium hirsutum HOM05D006546 ORTHO05D008362 1.2e-75 287.7 246 63.0
TPR.G28004 Trifolium pratense HOM05D006546 ORTHO05D008362 3.0e-74 283.1 357 48.7
TPR.G39968 Trifolium pratense HOM05D006546 ORTHO05D008362 3.0e-74 283.1 166 83.1
SMO137G0185 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 4.3e-73 279.3 257 53.3
Ah.00g001170 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.4e-71 274.2 195 73.3
Ah.14g079490 Amaranthus hybridus HOM05D006546 ORTHO05D008362 3.1e-71 273.1 195 72.8
FAN24G0701 Fragaria x ananassa HOM05D006546 ORTHO05D008362 6.8e-71 271.9 189 74.6
RcHm_v2.0_Chr6g0274681 Rosa chinensis HOM05D006546 ORTHO05D008362 3.7e-69 266.2 167 79.6
THA.LOC104810664 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 1.7e-66 257.3 149 83.9
Glyma.02G080402 Glycine max HOM05D006546 ORTHO05D008362 1.1e-60 238.0 144 77.1
SMO182G0010 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 7.1e-60 235.3 259 48.3
THA.LOC104803355 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 4.6e-59 232.6 207 61.8
Eucgr.K02158 Eucalyptus grandis HOM05D006546 ORTHO05D008362 1.3e-58 231.1 188 63.8
THA.LOC104820721 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 2.9e-53 213.4 141 73.8
Ah.04g160680 Amaranthus hybridus HOM05D006546 ORTHO05D008362 7.4e-41 172.2 108 78.7
SEGI_13550 Sequoiadendron giganteum HOM05D006546 ORTHO05D008362 1.9e-36 157.5 97 74.2
CDE08G0315 Ceratophyllum demersum HOM05D006546 ORTHO05D008362 4.8e-32 142.9 144 57.6
MCO02G484 Micromonas commoda HOM05D006546 ORTHO05D008362 5.3e-31 139.4 238 35.3
ECA247G1774 Erigeron canadensis HOM05D006546 ORTHO05D000004 6.5e-29 132.5 145 53.8
SMO063G0001 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 2.2e-24 117.5 102 55.9
Hund17461 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.1e-23 113.2 258 32.9
Medtr6g037560 Medicago truncatula HOM05D006546 ORTHO05D008362 6.9e-15 85.9 49 75.5
AagrBONN_evm.TU.Sc2ySwM_228.4528 Anthoceros agrestis HOM05D006546 ORTHO05D008362 3.6e-11 73.6 58 63.8
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 1.5e-09 68.2 71 50.7


User provided reference genes

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