Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 0.0e+00 4374.3 2348 100.0
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 0.0e+00 4110.1 2394 93.1
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 0.0e+00 3004.5 2417 72.2
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 0.0e+00 1624.0 2927 41.9
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 0.0e+00 1382.1 2881 39.2
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 7.2e-177 626.7 2630 31.6
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 1.2e-22 114.4 469 31.8
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 3.8e-21 109.4 605 27.4
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 8.6e-21 108.2 210 37.1
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 1.6e-19 104.0 628 27.9
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 2.3e-18 100.1 534 28.8
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 5.2e-18 99.0 87 58.6
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 7.5e-17 95.1 88 59.1
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.8e-15 90.5 88 54.5
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 3.2e-15 89.7 221 33.5
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 5.4e-15 89.0 191 39.8
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 7.0e-15 88.6 595 28.4
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 2.7e-14 86.7 608 26.3
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 3.5e-14 86.3 465 29.7
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 4.5e-14 85.9 564 27.7
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 5.9e-14 85.5 84 56.0
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 5.9e-14 85.5 547 26.9
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 5.9e-14 85.5 581 26.0
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 6.6e-13 82.0 114 48.2
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 1.1e-12 81.3 269 32.0
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 4.3e-12 79.3 632 25.9
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 1.8e-10 73.9 321 28.3
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 1.8e-10 73.9 440 28.6
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 4.0e-10 72.8 520 27.7
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 1.5e-09 70.9 646 26.3
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.4e-09 69.7 327 30.9
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 4.4e-09 69.3 287 29.6
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 7.5e-09 68.6 164 32.9
Actinidia10638 Actinidia chinensis HOM05D016043 ORTHO05D015789 9.8e-09 68.2 506 25.9
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 1.3e-08 67.8 638 25.7
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 2.2e-08 67.0 430 29.3
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.2e-08 67.0 430 28.8
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 2.9e-08 66.6 259 27.8
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 8.3e-08 65.1 741 25.2
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 1.9e-07 63.9 562 23.3
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 3.2e-07 63.2 90 43.3
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 3.2e-07 63.2 87 44.8
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 3.2e-07 63.2 816 25.0
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 4.1e-07 62.8 216 30.1
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 5.4e-07 62.4 440 29.3
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 5.4e-07 62.4 235 28.5
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 2.0e-06 60.5 60 51.7
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 2.7e-06 60.1 38 68.4
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 3.5e-06 59.7 85 40.0
Dinv25881 Davidia involucrata HOM05D016043 ORTHO05D015789 3.5e-06 59.7 303 28.4
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 3.5e-06 59.7 431 29.2
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 3.5e-06 59.7 54 57.4
Dinv42169 Davidia involucrata HOM05D023276 ORTHO05D026395 4.6e-06 59.3 39 74.4
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 7.8e-06 58.5 88 39.8
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 7.8e-06 58.5 88 39.8
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 7.8e-06 58.5 49 59.2
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 7.8e-06 58.5 828 22.9


User provided reference genes

Program Settings