Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 5.0e-33 144.4 109 95.4
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 5.0e-33 144.4 109 100.0
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 4.8e-28 127.9 109 82.6
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 1.2e-26 123.2 108 85.2
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 2.9e-25 118.6 109 78.9
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 5.5e-24 114.4 109 86.2
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 6.1e-23 110.9 89 85.4
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 5.2e-22 107.8 98 79.6
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 8.9e-22 107.1 88 75.0
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 4.4e-21 104.8 108 75.0
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 3.7e-20 101.7 88 80.7
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 3.7e-20 101.7 88 80.7
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 4.9e-20 101.3 110 73.6
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.8e-19 99.4 80 75.0
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.6e-18 96.3 102 80.4
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 2.7e-18 95.5 88 78.4
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.3e-17 93.2 98 75.5
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 1.5e-16 89.7 50 78.0
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 9.5e-16 87.0 109 62.4
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 1.2e-15 86.7 102 68.6
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 2.1e-15 85.9 70 61.4
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.4e-14 83.2 70 61.4
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 2.3e-14 82.4 85 67.1
Actinidia29536 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.0e-14 81.6 66 60.6
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 4.0e-14 81.6 89 74.2
Migut.N01983 Erythranthe guttata HOM05D002879 ORTHO05D002930 5.2e-14 81.3 77 71.4
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.8e-14 80.9 66 57.6
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 8.9e-14 80.5 87 70.1
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 8.9e-14 80.5 48 75.0
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 1.5e-13 79.7 51 70.6
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 2.0e-13 79.3 86 70.9
Migut.N02014 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.6e-13 79.0 74 55.4
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 2.6e-13 79.0 86 51.2
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 3.4e-13 78.6 86 73.3
Migut.C00982 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.4e-13 78.2 74 64.9
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 7.5e-13 77.4 48 68.8
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 7.5e-13 77.4 86 59.3
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 1.3e-12 76.6 87 71.3
SEGI_09931 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 1.3e-12 76.6 70 52.9
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 1.7e-12 76.3 89 64.0
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.7e-12 76.3 67 55.2
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 1.7e-12 76.3 66 54.5
Migut.N01982 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.2e-12 75.9 70 55.7
Migut.N02015 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.2e-12 75.9 70 55.7
Migut.I00192 Erythranthe guttata HOM05D002879 ORTHO05D002930 3.7e-12 75.1 80 72.5
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 3.7e-12 75.1 48 66.7
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 3.7e-12 75.1 70 52.9
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 6.4e-12 74.3 48 68.8
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 6.4e-12 74.3 48 68.8
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 6.4e-12 74.3 88 56.8
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 8.3e-12 73.9 86 70.9
Os02g0543000 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 8.3e-12 73.9 47 70.2
Hund26910 Selenicereus undatus HOM05D002879 ORTHO05D002930 8.3e-12 73.9 109 66.1
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-11 73.6 46 67.4
vmacro23421 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-11 73.6 46 71.7
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 1.4e-11 73.2 48 64.6
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 2.4e-11 72.4 68 52.9
EL10Ac1g01570 Beta vulgaris HOM05D002879 ORTHO05D002930 3.2e-11 72.0 43 74.4
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 3.2e-11 72.0 50 64.0
Migut.C00983 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.1e-11 71.6 104 72.1
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 9.2e-11 70.5 79 62.0
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 9.2e-11 70.5 87 51.7
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 1.6e-10 69.7 84 67.9
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 2.0e-10 69.3 50 62.0
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 2.7e-10 68.9 48 60.4
Actinidia17783 Actinidia chinensis HOM05D002879 ORTHO05D002930 3.5e-10 68.6 47 61.7
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 3.5e-10 68.6 83 44.6
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.5e-10 68.6 44 70.5
SEGI_40905 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 3.5e-10 68.6 51 62.7
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 4.6e-10 68.2 89 67.4
Hund26690 Selenicereus undatus HOM05D002879 ORTHO05D002930 4.6e-10 68.2 43 67.4
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 4.6e-10 68.2 70 52.9
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 6.0e-10 67.8 47 66.0
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 6.0e-10 67.8 87 65.5
Rhsim11G0084100 Rhododendron simsii HOM05D000132 ORTHO05D000058 6.0e-10 67.8 88 68.2
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 7.8e-10 67.4 85 67.1
TWI34G0242 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 7.8e-10 67.4 41 70.7
Os01g0959100 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 1.0e-09 67.0 40 67.5
AUR62026684 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.7e-09 66.2 85 63.5
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.7e-09 66.2 85 62.4
Sc26g0002500 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.7e-09 66.2 88 67.0
Actinidia04759 Actinidia chinensis HOM05D002879 ORTHO05D002930 2.3e-09 65.9 86 62.8
EL10Ac1g01577 Beta vulgaris HOM05D002879 ORTHO05D002930 3.0e-09 65.5 44 61.4
Rhsim11G0084700 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.0e-09 65.5 79 65.8
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.0e-09 65.5 85 60.0
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 3.9e-09 65.1 49 61.2
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 5.0e-09 64.7 85 64.7
Rhsim11G0084400 Rhododendron simsii HOM05D002879 ORTHO05D002930 5.0e-09 64.7 95 63.2
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 6.6e-09 64.3 85 65.9
Eucgr.E02068 Eucalyptus grandis HOM05D002879 ORTHO05D002930 6.6e-09 64.3 48 62.5
Sc26g0002490 Simmondsia chinensis HOM05D002879 ORTHO05D002930 6.6e-09 64.3 80 41.2
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.6e-09 64.3 85 65.9
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.6e-09 64.3 85 67.1
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.6e-09 64.3 85 65.9
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 8.6e-09 63.9 48 60.4
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.1e-08 63.5 47 63.8
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.1e-08 63.5 85 65.9
TPR.G31183 Trifolium pratense HOM05D002879 ORTHO05D002930 1.1e-08 63.5 70 58.6
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.5e-08 63.2 70 65.7
AUR62014500 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.9e-08 62.8 62 53.2
AUR62038035 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.9e-08 62.8 62 53.2
AUR62038038 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.9e-08 62.8 62 53.2
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.9e-08 62.8 86 61.6
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 2.5e-08 62.4 47 55.3
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 2.5e-08 62.4 43 60.5
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 4.3e-08 61.6 89 66.3
Manes.02G180800 Manihot esculenta HOM05D002879 ORTHO05D002930 5.6e-08 61.2 86 43.0
vmacro12406 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 5.6e-08 61.2 45 57.8
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 7.3e-08 60.8 45 60.0
vmacro02691 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 7.3e-08 60.8 70 47.1
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 9.5e-08 60.5 87 67.8
Rhsim13G0037600 Rhododendron simsii HOM05D002879 ORTHO05D002930 9.5e-08 60.5 73 47.9
Actinidia04758 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.2e-07 60.1 65 46.2
EL10Ac1g00648 Beta vulgaris HOM05D002879 ORTHO05D002930 1.2e-07 60.1 44 63.6
Rhsim11G0084300 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.2e-07 60.1 79 65.8
vmacro02689 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.6e-07 59.7 70 62.9
Zm00001eb362480 Zea mays HOM05D002879 ORTHO05D002930 1.6e-07 59.7 45 55.6
CAN.G264.4 Capsicum annuum HOM05D002879 ORTHO05D002930 2.8e-07 58.9 86 59.3
MD10G1029000 Malus domestica HOM05D002879 ORTHO05D002930 2.8e-07 58.9 48 58.3
AUR62014501 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.6e-07 58.5 45 62.2
AUR62035549 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.6e-07 58.5 84 66.7
AUR62038034 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.6e-07 58.5 84 66.7
AUR62038037 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.6e-07 58.5 84 66.7
Oeu046047.1 Olea europaea HOM05D002879 ORTHO05D002930 3.6e-07 58.5 82 57.3
Migut.C00980 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.7e-07 58.2 68 52.9
Lsat_1_v5_gn_9_41200 Lactuca sativa HOM05D002879 ORTHO05D002930 4.7e-07 58.2 46 58.7
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 4.7e-07 58.2 86 62.8
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 4.7e-07 58.2 86 62.8
Rhsim11G0084800 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.7e-07 58.2 49 51.0
vmacro01467 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.7e-07 58.2 45 57.8
Actinidia29537 Actinidia chinensis HOM05D002879 ORTHO05D002930 6.2e-07 57.8 65 46.2
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 6.2e-07 57.8 70 48.6
Sc26g0003520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 8.0e-07 57.4 82 67.1
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 1.1e-06 57.0 111 60.4
Rhsim11G0084600 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.4e-06 56.6 49 51.0
Cpa.g.sc21.214 Carica papaya HOM05D002879 ORTHO05D002930 1.8e-06 56.2 85 54.1
AUR62026686 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.8e-06 56.2 90 60.0
arahy.Tifrunner.gnm1.ann1.BF4CMP Arachis hypogaea HOM05D002879 ORTHO05D002930 3.1e-06 55.5 51 54.9
Zm00001eb263060 Zea mays HOM05D002879 ORTHO05D002930 3.1e-06 55.5 46 52.2
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 4.0e-06 55.1 86 40.7
Eucgr.E02071 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.0e-06 55.1 78 42.3
Os01g0963600 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 4.0e-06 55.1 45 48.9


User provided reference genes

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