Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 5.0e-36 154.5 112 100.0
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 6.5e-28 127.5 89 94.4
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 2.5e-27 125.6 101 84.2
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 6.1e-26 120.9 89 82.0
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.0e-25 120.2 111 80.2
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 1.4e-25 119.8 90 82.2
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 1.1e-24 116.7 108 80.6
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 3.3e-24 115.2 90 84.4
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 3.3e-24 115.2 90 84.4
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 9.7e-24 113.6 90 85.6
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 9.7e-24 113.6 110 75.5
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 2.8e-23 112.1 89 85.4
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 7.0e-22 107.5 90 81.1
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 2.0e-21 105.9 110 71.8
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.1e-19 100.1 82 84.1
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 2.5e-19 99.0 100 76.0
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 9.4e-19 97.1 80 81.2
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 1.6e-18 96.3 86 73.3
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 2.7e-18 95.5 79 77.2
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 1.8e-17 92.8 83 80.7
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 2.3e-17 92.4 111 64.9
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 5.2e-17 91.3 52 76.9
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 6.7e-17 90.9 87 56.3
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 8.8e-17 90.5 92 75.0
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.3e-15 86.7 86 75.6
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 2.2e-15 85.9 92 69.6
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 3.7e-15 85.1 87 71.3
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 3.7e-15 85.1 48 81.2
Migut.N01983 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.8e-15 84.7 78 70.5
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 4.8e-15 84.7 89 56.2
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 8.2e-15 84.0 90 65.6
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 8.2e-15 84.0 89 71.9
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 1.4e-14 83.2 87 73.6
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 1.8e-14 82.8 87 59.8
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.4e-14 82.4 112 61.6
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.4e-14 82.4 94 61.7
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.1e-14 82.0 112 62.5
Migut.I00192 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.1e-14 81.6 80 75.0
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 7.0e-14 80.9 93 55.9
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 7.0e-14 80.9 48 75.0
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 9.1e-14 80.5 72 59.7
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 9.1e-14 80.5 110 60.9
Migut.N02014 Erythranthe guttata HOM05D002879 ORTHO05D002930 9.1e-14 80.5 75 53.3
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 1.2e-13 80.1 87 70.1
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 1.2e-13 80.1 48 72.9
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.6e-13 79.7 52 75.0
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 2.0e-13 79.3 90 66.7
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.0e-13 79.3 46 76.1
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 2.0e-13 79.3 85 70.6
Rhsim11G0084100 Rhododendron simsii HOM05D000132 ORTHO05D000058 3.5e-13 78.6 90 72.2
Actinidia29536 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.5e-13 78.2 67 59.7
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 4.5e-13 78.2 93 65.6
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.5e-13 78.2 91 70.3
Hund26910 Selenicereus undatus HOM05D002879 ORTHO05D002930 4.5e-13 78.2 92 69.6
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 5.9e-13 77.8 86 68.6
Migut.N01982 Erythranthe guttata HOM05D002879 ORTHO05D002930 5.9e-13 77.8 74 52.7
Migut.N02015 Erythranthe guttata HOM05D002879 ORTHO05D002930 5.9e-13 77.8 74 52.7
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 5.9e-13 77.8 86 67.4
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 1.0e-12 77.0 86 70.9
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.0e-12 77.0 52 73.1
vmacro23421 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.0e-12 77.0 48 70.8
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.3e-12 76.6 86 65.1
Actinidia17783 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.7e-12 76.3 47 72.3
Os02g0543000 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 1.7e-12 76.3 69 71.0
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 2.2e-12 75.9 54 68.5
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 2.2e-12 75.9 54 68.5
EL10Ac1g01570 Beta vulgaris HOM05D002879 ORTHO05D002930 3.8e-12 75.1 43 79.1
Migut.C00982 Erythranthe guttata HOM05D002879 ORTHO05D002930 3.8e-12 75.1 47 66.0
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 5.0e-12 74.7 93 55.9
Migut.C00983 Erythranthe guttata HOM05D002879 ORTHO05D002930 5.0e-12 74.7 80 73.8
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 5.0e-12 74.7 44 79.5
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 6.5e-12 74.3 90 67.8
Sc26g0002490 Simmondsia chinensis HOM05D002879 ORTHO05D002930 6.5e-12 74.3 83 47.0
Rhsim11G0084700 Rhododendron simsii HOM05D002879 ORTHO05D002930 8.5e-12 73.9 94 61.7
Sc26g0002500 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.1e-11 73.6 90 68.9
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 1.1e-11 73.6 48 66.7
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.5e-11 73.2 86 67.4
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.5e-11 73.2 86 67.4
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.9e-11 72.8 92 62.0
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 2.5e-11 72.4 47 72.3
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 2.5e-11 72.4 54 61.1
Rhsim11G0084400 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.5e-11 72.4 94 62.8
SEGI_09931 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 2.5e-11 72.4 51 68.6
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.5e-11 72.4 86 69.8
SEGI_40905 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 3.2e-11 72.0 51 68.6
EL10Ac1g01577 Beta vulgaris HOM05D002879 ORTHO05D002930 5.5e-11 71.2 44 68.2
Hund26690 Selenicereus undatus HOM05D002879 ORTHO05D002930 5.5e-11 71.2 43 72.1
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.2e-10 70.1 47 72.3
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 1.6e-10 69.7 48 62.5
TWI34G0242 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 2.1e-10 69.3 41 73.2
vmacro12406 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.7e-10 68.9 47 66.0
Actinidia04759 Actinidia chinensis HOM05D002879 ORTHO05D002930 3.6e-10 68.6 113 61.9
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 3.6e-10 68.6 47 66.0
Rhsim11G0084300 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.6e-10 68.6 94 61.7
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 3.6e-10 68.6 86 65.1
CAN.G264.4 Capsicum annuum HOM05D002879 ORTHO05D002930 4.7e-10 68.2 86 61.6
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 4.7e-10 68.2 54 63.0
AUR62026683 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.1e-10 67.8 86 68.6
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 8.0e-10 67.4 117 59.0
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 8.0e-10 67.4 54 63.0
Migut.C00980 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.0e-09 67.0 68 54.4
AUR62026684 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.4e-09 66.6 89 60.7
Rhsim11G0084800 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.4e-09 66.6 54 55.6
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 1.8e-09 66.2 87 64.4
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 1.8e-09 66.2 87 64.4
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 1.8e-09 66.2 72 52.8
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 2.3e-09 65.9 113 64.6
Os01g0959100 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 2.3e-09 65.9 79 68.4
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.0e-09 65.5 48 62.5
Rhsim11G0084600 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.0e-09 65.1 54 55.6
vmacro02691 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 5.2e-09 64.7 54 59.3
EL10Ac1g00648 Beta vulgaris HOM05D002879 ORTHO05D002930 6.8e-09 64.3 64 51.6
Zm00001eb362480 Zea mays HOM05D002879 ORTHO05D002930 6.8e-09 64.3 46 60.9
AUR62035549 Chenopodium quinoa HOM05D002879 ORTHO05D002930 8.8e-09 63.9 85 65.9
AUR62038034 Chenopodium quinoa HOM05D002879 ORTHO05D002930 8.8e-09 63.9 85 65.9
AUR62038037 Chenopodium quinoa HOM05D002879 ORTHO05D002930 8.8e-09 63.9 85 65.9
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 8.8e-09 63.9 47 66.0
Oeu046047.1 Olea europaea HOM05D002879 ORTHO05D002930 1.2e-08 63.5 77 59.7
Sc26g0003520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.2e-08 63.5 84 67.9
Manes.02G180800 Manihot esculenta HOM05D002879 ORTHO05D002930 1.5e-08 63.2 86 43.0
Rhsim13G0037600 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.5e-08 63.2 75 50.7
vmacro02689 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.5e-08 63.2 47 66.0
Eucgr.E02068 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.0e-08 62.8 48 60.4
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 2.0e-08 62.8 89 62.9
AUR62014500 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.4e-08 61.6 48 66.7
AUR62038035 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.4e-08 61.6 48 66.7
AUR62038038 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.4e-08 61.6 48 66.7
Cc10_g14940 Coffea canephora HOM05D002879 ORTHO05D002930 4.4e-08 61.6 111 53.2
vmacro01467 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.4e-08 61.6 45 62.2
Lsat_1_v5_gn_9_41200 Lactuca sativa HOM05D002879 ORTHO05D002930 5.7e-08 61.2 46 60.9
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 5.7e-08 61.2 75 54.7
TPR.G31183 Trifolium pratense HOM05D002879 ORTHO05D002930 5.7e-08 61.2 72 61.1
AUR62026686 Chenopodium quinoa HOM05D002879 ORTHO05D002930 7.5e-08 60.8 91 59.3
Prupe.8G034100 Prunus persica HOM05D002879 ORTHO05D002930 1.3e-07 60.1 87 58.6
Sed0017062 Sechium edule HOM05D002879 ORTHO05D002930 1.3e-07 60.1 54 51.9
MD10G1029000 Malus domestica HOM05D002879 ORTHO05D002930 1.7e-07 59.7 48 58.3
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 2.2e-07 59.3 87 40.2
Zm00001eb263060 Zea mays HOM05D002879 ORTHO05D002930 2.2e-07 59.3 46 56.5
Actinidia04758 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.8e-07 58.2 67 46.3
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 4.8e-07 58.2 91 57.1
AUR62014501 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.8e-07 58.2 85 65.9
Eucgr.E02071 Eucalyptus grandis HOM05D002879 ORTHO05D002930 6.3e-07 57.8 79 41.8
Os01g0963600 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 8.3e-07 57.4 81 55.6
Lj2g0004069 Lotus japonicus HOM05D002879 ORTHO05D002930 1.1e-06 57.0 111 55.9
Actinidia29537 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.4e-06 56.6 67 47.8
arahy.Tifrunner.gnm1.ann1.BF4CMP Arachis hypogaea HOM05D002879 ORTHO05D002930 1.8e-06 56.2 51 54.9
Eucgr.F02697 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.8e-06 56.2 89 53.9
MBI09_g02187_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 1.8e-06 56.2 34 79.4
Medtr0583s0010 Medicago truncatula HOM05D002879 ORTHO05D002930 1.8e-06 56.2 75 56.0
Sopen04g027610 Solanum pennellii HOM05D002879 ORTHO05D002930 1.8e-06 56.2 86 62.8
vmacro23422 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.4e-06 55.8 52 51.9
CiPaw.16G010900 Carya illinoinensis HOM05D002879 ORTHO05D002930 3.1e-06 55.5 87 57.5
AUR62040599 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.1e-06 55.5 46 58.7
Manes.02G181000 Manihot esculenta HOM05D002879 ORTHO05D002930 3.1e-06 55.5 48 52.1
Cpa.g.sc21.214 Carica papaya HOM05D002879 ORTHO05D002930 4.1e-06 55.1 86 51.2
Ciclev10002747m.g Citrus clementina HOM05D002879 ORTHO05D002930 4.1e-06 55.1 48 56.2
Ciclev10002749m.g Citrus clementina HOM05D002879 ORTHO05D002930 4.1e-06 55.1 48 56.2
Oeu046050.1 Olea europaea HOM05D002879 ORTHO05D002930 4.1e-06 55.1 72 68.1
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 4.1e-06 55.1 92 59.8
unitig_747.g21665 Utricularia gibba HOM05D002879 ORTHO05D002930 4.1e-06 55.1 44 54.5
AUR62040592 Chenopodium quinoa HOM05D002879 ORTHO05D002930 5.4e-06 54.7 86 62.8
Cc10_g14960 Coffea canephora HOM05D002879 ORTHO05D002930 5.4e-06 54.7 92 56.5
Eucgr.F04219 Eucalyptus grandis HOM05D002879 ORTHO05D002930 5.4e-06 54.7 87 56.3
MD05G1028100 Malus domestica HOM05D002879 ORTHO05D002930 5.4e-06 54.7 48 54.2
SEGI_17221 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 5.4e-06 54.7 44 59.1
Zm00001eb243310 Zea mays HOM05D002879 ORTHO05D002930 5.4e-06 54.7 79 58.2
Eucgr.E02069 Eucalyptus grandis HOM05D002879 ORTHO05D002930 7.0e-06 54.3 79 40.5
SMO351G0439 Selaginella moellendorffii HOM05D002879 ORTHO05D002930 7.0e-06 54.3 83 56.6


User provided reference genes

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