Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 2.0e-148 529.3 298 100.0
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 8.9e-141 503.8 326 89.3
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.5e-116 423.3 315 78.4
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 6.0e-113 411.4 322 72.4
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.2e-100 370.5 345 64.3
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.4e-98 363.6 332 66.0
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 6.7e-88 328.2 320 61.6
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 1.4e-61 240.7 314 47.1
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 2.4e-53 213.4 311 42.4
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 8.5e-51 204.9 294 44.9
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 4.7e-49 199.1 298 45.3
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 3.0e-48 196.4 302 41.7
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 5.7e-47 192.2 362 39.2
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 7.0e-45 185.3 302 42.1
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 1.3e-43 181.0 366 36.1
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 3.8e-43 179.5 269 42.8
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.6e-41 174.1 327 37.6
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.7e-41 173.3 304 39.8
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 3.6e-41 172.9 303 40.6
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.0e-40 171.4 297 39.4
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.3e-40 170.2 193 50.8
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 3.0e-40 169.9 203 47.8
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 4.0e-40 169.5 193 50.8
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 8.8e-40 168.3 206 48.1
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 8.8e-40 168.3 206 47.6
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 1.2e-39 167.9 299 39.1
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 7.5e-39 165.2 377 35.3
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 1.3e-38 164.5 194 45.9
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 1.3e-38 164.5 194 48.5
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.7e-38 164.1 194 50.0
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 2.8e-38 163.3 190 49.5
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 2.8e-38 163.3 306 35.3
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 3.7e-38 162.9 179 52.5
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 3.7e-38 162.9 299 38.1
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 8.3e-38 161.8 314 36.9
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 7.0e-37 158.7 299 37.1
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 9.2e-37 158.3 185 51.9
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.7e-36 156.8 173 49.1
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 7.7e-36 155.2 200 45.0
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.0e-35 154.8 249 41.4
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.3e-35 154.5 196 46.9
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 5.0e-35 152.5 144 53.5
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 5.0e-35 152.5 194 45.4
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 5.0e-35 152.5 144 53.5
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 8.6e-35 151.8 257 38.1
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.1e-34 151.4 338 32.8
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 1.1e-34 151.4 165 50.9
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 1.1e-34 151.4 192 46.4
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 1.5e-34 151.0 215 44.2
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 3.3e-34 149.8 188 44.1
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 4.3e-34 149.4 188 45.7
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 5.6e-34 149.1 186 44.6
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.2e-33 147.9 144 52.1
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 1.6e-33 147.5 178 48.9
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.6e-33 147.5 146 55.5
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.1e-33 147.1 181 45.9
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 2.1e-33 147.1 145 52.4
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 2.8e-33 146.7 145 52.4
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 3.6e-33 146.4 193 44.0
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 4.7e-33 146.0 145 52.4
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 4.7e-33 146.0 178 48.3
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 4.7e-33 146.0 197 43.7
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 6.1e-33 145.6 171 48.5
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.8e-32 144.1 144 51.4
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 2.3e-32 143.7 199 42.2
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 2.3e-32 143.7 196 43.4
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 3.0e-32 143.3 156 49.4
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 4.0e-32 142.9 173 46.8
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.0e-32 142.9 192 42.7
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 5.2e-32 142.5 209 42.1
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 5.2e-32 142.5 193 42.5
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 5.2e-32 142.5 186 46.8
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 5.2e-32 142.5 144 53.5
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 6.8e-32 142.1 140 50.7
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.2e-31 141.4 142 50.7
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.2e-31 141.4 192 43.2
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.5e-31 141.0 193 42.0
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.5e-31 141.0 194 40.7
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 2.6e-31 140.2 135 52.6
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.6e-31 140.2 151 51.0
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.6e-31 140.2 365 30.7
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 3.4e-31 139.8 147 48.3
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 7.5e-31 138.7 144 48.6
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 7.5e-31 138.7 139 50.4
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 7.5e-31 138.7 197 43.1
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 9.8e-31 138.3 271 38.7
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.3e-30 137.9 133 52.6
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.7e-30 137.5 141 50.4
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 2.2e-30 137.1 147 47.6
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.2e-30 137.1 145 47.6
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 2.9e-30 136.7 147 47.6
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 4.9e-30 136.0 132 52.3
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 6.4e-30 135.6 267 37.5
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.1e-29 134.8 277 34.7
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.1e-29 134.8 182 41.2
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 1.8e-29 134.0 181 44.2
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 2.4e-29 133.7 146 49.3
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 3.2e-29 133.3 172 44.2
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 7.0e-29 132.1 145 46.9
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 9.2e-29 131.7 297 33.3
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 1.2e-28 131.3 142 47.2
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 2.7e-28 130.2 192 41.1
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 2.7e-28 130.2 405 29.4
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 4.6e-28 129.4 155 45.2
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 7.8e-28 128.6 166 42.8
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.9e-26 124.0 194 39.2
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.5e-26 123.6 145 43.4
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 4.3e-26 122.9 160 46.9
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 5.6e-26 122.5 302 34.4
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 7.3e-26 122.1 299 31.1
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.8e-24 117.5 264 33.7
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 4.0e-24 116.3 155 43.2
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 2.0e-23 114.0 192 41.1
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 2.9e-22 110.2 146 43.2
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 5.4e-21 105.9 144 40.3
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 5.4e-21 105.9 284 31.0
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 7.0e-21 105.5 285 31.2
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 4.6e-20 102.8 148 44.6
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 2.3e-19 100.5 236 34.7
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 4.3e-18 96.3 147 39.5
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 7.3e-18 95.5 143 41.3
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 5.8e-15 85.9 96 46.9
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.7e-14 84.3 107 45.8
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.2e-14 84.0 153 39.2
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 7.1e-13 79.0 99 45.5
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 1.6e-12 77.8 92 48.9
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.3e-11 73.9 66 53.0
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 4.7e-09 66.2 67 49.3
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 8.1e-09 65.5 115 36.5
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 1.4e-08 64.7 254 25.2
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.4e-08 64.7 104 35.6
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 7.6e-07 58.9 210 28.6
Ah.08g219370 Amaranthus hybridus HOM05D000136 ORTHO05D000080 8.4e-06 55.5 122 32.0
Medtr5g078040 Medicago truncatula HOM05D000136 ORTHO05D000080 8.4e-06 55.5 93 34.4
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 8.4e-06 55.5 196 27.6


User provided reference genes

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