Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 5.4e-270 933.7 461 100.0
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 4.5e-224 781.2 378 100.0
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 3.2e-222 775.0 378 99.2
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.4e-209 733.0 388 91.2
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.0e-207 726.9 378 92.3
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 2.3e-204 715.7 383 91.4
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 3.9e-151 538.9 386 71.0
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 2.8e-149 532.7 281 90.7
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 2.4e-145 519.6 373 67.6
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 3.2e-145 519.2 369 69.6
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 5.4e-145 518.5 380 67.1
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 1.1e-142 510.8 376 68.6
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 2.1e-141 506.5 379 67.3
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 5.2e-140 501.9 373 64.9
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 8.9e-140 501.1 377 66.3
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 2.6e-139 499.6 379 63.1
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 3.4e-139 499.2 379 63.9
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 7.5e-139 498.0 378 65.9
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 7.5e-139 498.0 371 66.0
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 3.7e-138 495.7 387 63.0
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 1.1e-137 494.2 375 66.4
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 4.1e-137 492.3 384 63.5
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 5.4e-137 491.9 394 61.4
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 7.1e-137 491.5 384 63.5
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 7.1e-137 491.5 384 63.5
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 1.2e-136 490.7 390 61.8
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 1.0e-135 487.6 373 64.6
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 3.9e-135 485.7 381 63.5
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 5.1e-135 485.3 379 64.4
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 8.6e-135 484.6 396 62.4
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 1.9e-134 483.4 384 63.5
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 1.9e-134 483.4 388 61.9
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 3.3e-134 482.6 378 63.2
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 3.3e-134 482.6 376 62.2
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 7.3e-134 481.5 380 62.4
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 1.2e-133 480.7 381 61.7
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 2.8e-133 479.6 380 63.9
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.4e-132 477.2 384 62.8
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 3.1e-132 476.1 388 60.8
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 5.2e-132 475.3 385 61.8
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 6.8e-132 474.9 380 62.1
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 8.9e-132 474.6 378 63.0
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 1.2e-131 474.2 392 60.5
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 1.5e-131 473.8 373 64.1
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 3.4e-131 472.6 381 59.6
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 5.8e-131 471.9 376 59.0
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 9.9e-131 471.1 385 61.0
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 9.9e-131 471.1 384 61.5
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 1.7e-130 470.3 382 62.0
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 2.2e-130 469.9 380 62.1
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 2.2e-130 469.9 381 64.3
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 2.9e-130 469.5 379 58.8
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 3.8e-130 469.2 381 61.7
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 3.2e-129 466.1 375 62.1
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 3.2e-129 466.1 386 61.1
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 3.2e-129 466.1 377 62.1
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 4.1e-129 465.7 392 59.7
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 7.1e-129 464.9 384 61.2
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 9.2e-129 464.5 380 62.4
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 1.6e-128 463.8 380 62.4
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 2.1e-128 463.4 387 59.7
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 2.7e-128 463.0 375 62.7
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 3.5e-128 462.6 374 62.8
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 3.5e-128 462.6 381 60.9
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 4.6e-128 462.2 382 58.9
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 6.0e-128 461.8 375 62.4
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 6.0e-128 461.8 385 59.5
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 7.8e-128 461.5 406 58.1
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 1.0e-127 461.1 375 62.4
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 1.0e-127 461.1 375 62.4
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 1.0e-127 461.1 388 60.3
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 5.1e-127 458.8 383 62.7
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 8.6e-127 458.0 376 61.4
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 3.3e-126 456.1 375 61.9
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 3.3e-126 456.1 392 58.4
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 5.6e-126 455.3 393 58.3
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 1.3e-122 444.1 357 62.7
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 1.4e-121 440.7 384 57.0
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 5.4e-121 438.7 382 57.1
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 9.3e-121 438.0 382 56.8
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 3.5e-120 436.0 388 56.2
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 2.3e-119 433.3 387 58.9
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 2.3e-119 433.3 387 58.9
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 1.6e-117 427.2 381 56.2
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 4.8e-117 425.6 300 67.7
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 3.1e-116 422.9 376 56.4
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 9.0e-116 421.4 339 64.0
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.3e-111 406.8 288 67.0
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 3.0e-111 406.4 379 56.5
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 6.7e-103 378.6 374 52.4
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 1.3e-101 374.4 304 61.5
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 9.0e-100 368.2 254 70.5
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 3.4e-99 366.3 395 49.6
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 7.6e-99 365.2 388 50.3
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 1.0e-90 338.2 351 51.9
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 2.2e-90 337.0 403 46.7
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 1.1e-86 324.7 381 47.5
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 3.3e-86 323.2 394 45.7
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 3.6e-80 303.1 199 71.4
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 6.7e-79 298.9 390 43.8
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 5.7e-78 295.8 320 49.7
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 2.2e-77 293.9 215 65.6
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 9.4e-73 278.5 260 54.6
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 6.1e-72 275.8 202 62.9
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 4.8e-61 239.6 163 67.5
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 8.0e-56 222.2 155 67.1
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 6.3e-53 212.6 382 35.6
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 1.2e-46 191.8 185 52.4
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 5.9e-43 179.5 110 73.6
FAN14G0378 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.0e-34 152.1 130 58.5
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 2.5e-33 147.5 233 37.3
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 7.3e-33 146.0 226 38.9
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 8.0e-32 142.5 200 41.5
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 4.6e-27 126.7 144 45.8
CDE08G0205 Ceratophyllum demersum HOM05D006114 ORTHO05D007609 1.1e-25 122.1 93 62.4
FvH4_3g14282 Fragaria vesca HOM05D006114 ORTHO05D007609 2.1e-24 117.9 97 58.8
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 9.2e-20 102.4 95 53.7
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 2.7e-19 100.9 104 49.0
Zm00001eb268570 Zea mays HOM05D006114 ORTHO05D007609 3.5e-19 100.5 79 60.8
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 7.8e-19 99.4 92 53.3
Hma1.2p1_0448F.1_g154860 Hydrangea macrophylla HOM05D004302 ORTHO05D004939 1.1e-17 95.5 390 26.9
VMungo1383G2819 Vigna mungo HOM05D006114 ORTHO05D007609 5.6e-17 93.2 77 55.8
ECA238G3553 Erigeron canadensis HOM05D004302 ORTHO05D004939 7.3e-17 92.8 392 24.7
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 1.2e-16 92.0 103 44.7
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 3.1e-15 87.4 74 54.1
Sabra17G0088200 Salix brachista HOM05D004302 ORTHO05D004939 4.0e-15 87.0 393 26.2
Nn3g17571 Nelumbo nucifera HOM05D004302 ORTHO05D004939 5.2e-15 86.7 356 25.3
MSTRG.25314 Avicennia marina HOM05D006114 ORTHO05D007609 7.6e-14 82.8 65 60.0
Aa31LG11G13870 Aethionema arabicum HOM05D004302 ORTHO05D004939 1.7e-13 81.6 359 25.1
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 2.4e-12 77.8 58 58.6
SGA_v2.0_scaffold17G07917 Striga asiatica HOM05D006114 ORTHO05D007609 4.1e-12 77.0 165 40.0
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 9.2e-12 75.9 390 24.6
FvH4_6g34681 Fragaria vesca HOM05D006114 ORTHO05D007609 1.6e-11 75.1 66 54.5
Sopen06g005200 Solanum pennellii HOM05D000795 ORTHO05D000706 1.3e-10 72.0 42 95.2
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.7e-10 71.6 396 24.0
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 3.9e-10 70.5 389 23.1
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 1.5e-09 68.6 360 23.3
Nn5g28167 Nelumbo nucifera HOM05D002809 ORTHO05D004939 1.9e-09 68.2 361 23.5
Mapoly0186s0014 Marchantia polymorpha HOM05D004302 ORTHO05D004939 2.5e-09 67.8 349 24.9
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.2e-08 65.5 369 22.8
Pp3c26_600 Physcomitrium patens HOM05D003005 ORTHO05D006906 6.2e-08 63.2 199 30.7
FvH4_6g34680 Fragaria vesca HOM05D006114 ORTHO05D007609 1.1e-07 62.4 50 64.0
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.1e-07 62.4 395 22.3
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 3.1e-07 60.8 397 21.9
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 3.1e-07 60.8 390 22.8
Mapoly0002s0187 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.2e-07 60.1 357 22.1
Pp3c24_8170 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.5e-06 58.5 381 21.0
SMO364G0869 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 1.5e-06 58.5 149 30.2
Pp3c21_15780 Physcomitrium patens HOM05D004302 ORTHO05D004939 3.4e-06 57.4 158 28.5
SalBow7G0003 Salvia bowleyana HOM05D007423 ORTHO05D009091 3.4e-06 57.4 143 30.8
AagrBONN_evm.TU.Sc2ySwM_362.1791 Anthoceros agrestis HOM05D008059 ORTHO05D009361 4.4e-06 57.0 170 29.4
TPR.G21289 Trifolium pratense HOM05D003005 ORTHO05D004170 4.4e-06 57.0 398 25.9
Aqoxy5G02276 Aquilegia oxysepala HOM05D002809 ORTHO05D004939 5.8e-06 56.6 374 21.4
RcHm_v2.0_Chr2g0119661 Rosa chinensis HOM05D006114 ORTHO05D007609 7.6e-06 56.2 37 62.2
SEGI_38976 Sequoiadendron giganteum HOM05D002809 ORTHO05D004939 7.6e-06 56.2 366 20.2


User provided reference genes

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