Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 1.6e-13 79.0 69 100.0
Peaxi162Scf00066g01714 Petunia axillaris HOM05D007812 ORTHO05D009912 2.8e-13 78.2 69 87.0
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 3.6e-13 77.8 69 82.6
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 2.6e-11 71.6 69 94.2
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 2.6e-11 71.6 66 78.8
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 2.6e-11 71.6 66 78.8
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 1.4e-09 65.9 38 94.7
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 1.6e-08 62.4 38 89.5
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 1.6e-08 62.4 38 86.8
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 2.1e-08 62.0 38 86.8
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 2.7e-08 61.6 38 86.8
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 2.7e-08 61.6 38 86.8
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 2.7e-08 61.6 38 86.8
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 2.7e-08 61.6 38 86.8
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 3.5e-08 61.2 38 86.8
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 3.5e-08 61.2 38 86.8
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 3.5e-08 61.2 38 84.2
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 6.0e-08 60.5 38 86.8
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 6.0e-08 60.5 38 86.8
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 6.0e-08 60.5 38 86.8
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 6.0e-08 60.5 38 84.2
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 7.9e-08 60.1 38 84.2
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 7.9e-08 60.1 38 84.2
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 1.0e-07 59.7 38 84.2
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 1.3e-07 59.3 38 81.6
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 1.3e-07 59.3 38 84.2
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 1.3e-07 59.3 38 81.6
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 1.3e-07 59.3 38 81.6
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 1.3e-07 59.3 38 81.6
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 1.3e-07 59.3 38 84.2
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 1.3e-07 59.3 38 84.2
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 1.8e-07 58.9 38 78.9
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 1.8e-07 58.9 38 81.6
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 1.8e-07 58.9 38 81.6
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 2.3e-07 58.5 38 78.9
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 2.3e-07 58.5 38 84.2
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 3.0e-07 58.2 36 86.1
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 3.0e-07 58.2 38 81.6
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 3.0e-07 58.2 37 83.8
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 3.9e-07 57.8 36 83.3
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 3.9e-07 57.8 38 81.6
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 3.9e-07 57.8 38 78.9
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 3.9e-07 57.8 36 86.1
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 3.9e-07 57.8 38 78.9
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 3.9e-07 57.8 38 78.9
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 5.1e-07 57.4 38 78.9
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 5.1e-07 57.4 38 78.9
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 78.9
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 78.9
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 78.9
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 78.9
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 78.9
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 78.9
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 78.9
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 81.6
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 78.9
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 6.7e-07 57.0 38 78.9
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 6.7e-07 57.0 37 78.4
unitig_88.g27591 Utricularia gibba HOM05D007812 ORTHO05D009912 8.7e-07 56.6 38 76.3
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 1.1e-06 56.2 38 73.7
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 1.5e-06 55.8 36 77.8
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 1.5e-06 55.8 37 75.7
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 1.5e-06 55.8 37 75.7
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 1.5e-06 55.8 37 75.7
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 1.5e-06 55.8 36 77.8
Glyma.07G009200 Glycine max HOM05D007812 ORTHO05D009912 1.9e-06 55.5 35 82.9
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 1.9e-06 55.5 38 73.7
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 2.5e-06 55.1 37 81.1
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 2.5e-06 55.1 38 78.9
Gohir.D06G199100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 2.5e-06 55.1 38 73.7
Gorai.010G232000 Gossypium raimondii HOM05D007812 ORTHO05D009912 2.5e-06 55.1 38 73.7
Hund18713 Selenicereus undatus HOM05D007812 ORTHO05D009912 2.5e-06 55.1 37 78.4
ATR0716G008 Amborella trichopoda HOM05D007812 ORTHO05D009912 3.3e-06 54.7 38 73.7
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 3.3e-06 54.7 38 76.3
CAN.G825.36 Capsicum annuum HOM05D007812 ORTHO05D009912 9.6e-06 53.1 38 73.7


User provided reference genes

Program Settings