Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 2.0e-189 666.0 445 100.0
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 2.3e-177 625.9 441 97.1
Nitab4.5_0000317g0090 Nicotiana tabacum HOM05D020480 ORTHO05D003486 2.0e-72 277.3 587 37.8
Nitab4.5_0003485g0040 Nicotiana tabacum HOM05D020480 ORTHO05D003486 1.6e-61 241.1 686 32.5
Peaxi162Scf00066g00424 Petunia axillaris HOM05D020480 ORTHO05D003486 1.7e-47 194.5 451 34.8
PGSC0003DMG400025327 Solanum tuberosum HOM05D020480 ORTHO05D003486 3.7e-42 176.8 392 59.2
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 6.2e-21 106.3 160 36.9
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.4e-17 95.1 155 34.2
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.6e-16 91.7 116 40.5
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 7.8e-16 89.4 165 34.5
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 7.8e-16 89.4 410 25.1
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.3e-15 88.6 156 35.9
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.7e-15 88.2 145 33.8
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 3.9e-15 87.0 146 37.0
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 6.6e-15 86.3 164 33.5
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 8.6e-15 85.9 163 33.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.5e-14 85.1 459 23.5
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 4.3e-14 83.6 112 36.6
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 4.3e-14 83.6 184 34.2
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 5.6e-14 83.2 110 37.3
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 5.6e-14 83.2 192 29.7
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.6e-14 83.2 444 29.5
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 2.1e-13 81.3 184 34.2
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.1e-13 81.3 169 32.5
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.8e-13 80.9 123 35.8
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.8e-13 80.9 184 33.7
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 4.7e-13 80.1 134 33.6
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 6.2e-13 79.7 168 29.8
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 8.1e-13 79.3 132 35.6
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 8.1e-13 79.3 112 33.9
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.8e-12 78.2 177 29.9
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.1e-12 77.4 105 36.2
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.1e-12 77.4 107 37.4
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 3.1e-12 77.4 145 31.0
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 5.2e-12 76.6 112 33.0
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 5.2e-12 76.6 156 31.4
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 6.8e-12 76.3 167 28.7
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 6.8e-12 76.3 180 32.2
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 8.9e-12 75.9 154 34.4
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.2e-11 75.5 107 36.4
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.5e-11 75.1 109 37.6
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.5e-11 75.1 109 37.6
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.5e-11 75.1 112 33.0
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 3.4e-11 73.9 112 33.0
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 4.4e-11 73.6 181 31.5
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 4.4e-11 73.6 158 30.4
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 5.8e-11 73.2 171 27.5
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.8e-11 73.2 157 31.2
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 7.6e-11 72.8 174 25.3
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 9.9e-11 72.4 109 35.8
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 9.9e-11 72.4 109 35.8
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 9.9e-11 72.4 99 36.4
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 9.9e-11 72.4 99 37.4
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 9.9e-11 72.4 214 27.6
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.3e-10 72.0 132 35.6
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.3e-10 72.0 164 28.0
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.7e-10 71.6 158 30.4
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.7e-10 71.6 108 31.5
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 2.2e-10 71.2 173 31.2
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.2e-10 71.2 114 36.0
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.2e-10 71.2 114 36.0
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.7e-10 70.5 113 36.3
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 3.7e-10 70.5 164 29.3
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 6.4e-10 69.7 97 30.9
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.4e-10 69.3 113 31.9
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.1e-09 68.9 180 28.3
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.1e-09 68.9 170 30.6
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.1e-09 68.9 153 33.3
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.1e-09 68.9 172 28.5
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.4e-09 68.6 116 33.6
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.4e-09 68.6 122 32.0
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.4e-09 68.6 174 29.9
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.4e-09 68.6 109 30.3
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.9e-09 68.2 105 32.4
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.9e-09 68.2 164 26.2
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.9e-09 68.2 95 34.7
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.9e-09 68.2 95 34.7
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.2e-09 67.4 106 33.0
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 3.2e-09 67.4 111 32.4
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 4.1e-09 67.0 108 29.6
ECA246G0424 Erigeron canadensis HOM05D006236 ORTHO05D003486 4.1e-09 67.0 151 31.8
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 4.1e-09 67.0 165 30.3
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 5.4e-09 66.6 109 36.7
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.4e-09 66.6 174 29.9
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 5.4e-09 66.6 110 30.0
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 7.1e-09 66.2 113 30.1
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 7.1e-09 66.2 70 41.4
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 9.2e-09 65.9 163 30.1
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 9.2e-09 65.9 107 33.6
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 9.2e-09 65.9 157 31.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 9.2e-09 65.9 88 38.6
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.2e-08 65.5 115 32.2
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.2e-08 65.5 115 32.2
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 1.2e-08 65.5 171 29.2
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.6e-08 65.1 113 32.7
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.6e-08 65.1 109 32.1
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 2.1e-08 64.7 109 32.1
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 2.1e-08 64.7 110 30.9
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.7e-08 64.3 95 33.7
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 2.7e-08 64.3 144 27.1
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 3.5e-08 63.9 110 30.0
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 3.5e-08 63.9 114 33.3
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 3.5e-08 63.9 148 31.1
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 4.6e-08 63.5 111 27.0
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 4.6e-08 63.5 179 27.4
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 4.6e-08 63.5 99 33.3
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.0e-07 62.4 129 32.6
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 1.0e-07 62.4 108 32.4
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 1.3e-07 62.0 175 25.7
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.3e-07 62.0 111 32.4
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.7e-07 61.6 175 25.7
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 1.7e-07 61.6 175 25.7
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 1.7e-07 61.6 90 35.6
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.3e-07 61.2 108 29.6
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 3.0e-07 60.8 113 29.2
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 3.0e-07 60.8 106 32.1
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 5.1e-07 60.1 129 31.8
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.1e-07 60.1 123 28.5
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 6.6e-07 59.7 110 28.2
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 8.6e-07 59.3 190 26.3
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.1e-06 58.9 107 29.0
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 1.1e-06 58.9 97 35.1
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.5e-06 58.5 109 29.4
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 2.5e-06 57.8 165 27.9
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 2.5e-06 57.8 141 27.0
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.5e-06 57.8 89 36.0
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.3e-06 57.4 134 27.6
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.3e-06 57.4 113 29.2
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 4.3e-06 57.0 104 27.9
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 5.6e-06 56.6 104 26.9
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 5.6e-06 56.6 172 29.1
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 5.6e-06 56.6 51 43.1
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 5.6e-06 56.6 94 30.9
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.6e-06 56.6 97 33.0
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 7.3e-06 56.2 104 28.8
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.3e-06 56.2 173 28.9


User provided reference genes

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