Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.3e-182 642.1 330 100.0
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 2.0e-181 639.0 330 99.1
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.8e-177 624.8 330 97.3
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 7.2e-160 567.4 331 88.5
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.6e-159 565.1 331 87.0
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 5.4e-155 551.2 329 85.7
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.5e-154 548.1 332 85.5
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 8.0e-151 537.3 330 81.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 5.6e-120 434.9 335 67.5
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.1e-118 430.6 333 66.7
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.6e-117 426.0 332 66.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 6.4e-116 421.4 334 65.9
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.1e-115 420.6 333 65.5
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 2.4e-115 419.5 335 66.3
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.4e-115 419.5 335 65.7
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.5e-112 410.2 335 65.1
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 3.3e-112 409.1 335 63.3
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 2.1e-111 406.4 334 63.2
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.8e-111 406.0 331 63.7
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 4.8e-111 405.2 335 62.7
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 6.2e-111 404.8 335 64.8
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 2.4e-110 402.9 334 61.1
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 6.9e-110 401.4 334 61.7
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.0e-109 399.8 333 62.5
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.0e-109 399.8 330 63.6
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.6e-109 399.4 329 63.5
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.5e-109 398.7 331 63.1
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 4.9e-108 395.2 327 63.6
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.1e-107 394.0 336 63.1
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.1e-107 394.0 334 61.7
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 2.4e-107 392.9 334 61.4
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 5.4e-107 391.7 340 61.8
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 5.4e-107 391.7 336 62.2
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.2e-106 390.6 334 61.1
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.2e-106 390.6 338 63.3
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.2e-106 390.6 335 60.6
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 2.7e-106 389.4 335 61.2
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.8e-105 386.7 386 53.6
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.3e-105 386.3 337 60.2
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 8.7e-105 384.4 335 61.5
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.5e-104 383.6 341 60.1
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 4.8e-103 378.6 334 61.7
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.8e-102 376.7 327 61.2
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 2.4e-102 376.3 334 61.4
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 4.5e-101 372.1 335 60.9
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.8e-101 371.7 340 59.7
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 5.8e-101 371.7 335 60.0
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.3e-100 370.5 334 58.7
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 2.9e-100 369.4 362 58.8
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 4.9e-100 368.6 334 58.1
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 4.9e-100 368.6 335 59.1
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.9e-99 366.7 342 59.1
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.9e-99 366.7 336 58.3
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.5e-99 366.3 339 58.7
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.2e-99 365.5 334 60.2
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.5e-99 365.2 334 59.9
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 7.1e-99 364.8 334 58.1
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.2e-98 364.0 340 58.8
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.5e-98 362.5 330 57.0
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 4.6e-98 362.1 334 59.0
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.0e-97 360.9 334 55.1
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-97 360.5 334 59.3
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.0e-97 359.4 334 54.8
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 3.9e-97 359.0 339 56.0
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 8.7e-97 357.8 323 57.9
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.5e-96 357.1 334 58.7
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 4.3e-96 355.5 336 57.4
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.7e-96 355.1 334 54.8
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 7.4e-96 354.8 340 59.7
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 7.4e-96 354.8 337 57.3
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.2e-95 351.7 334 57.8
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.1e-94 350.9 279 64.2
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-94 350.5 339 58.7
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.4e-94 350.5 334 54.5
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 3.1e-94 349.4 278 64.4
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 5.3e-94 348.6 340 55.9
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 9.0e-94 347.8 343 57.7
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.6e-93 346.3 340 55.6
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.5e-93 345.5 280 63.2
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.5e-93 345.5 342 54.7
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.3e-92 344.0 286 61.5
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.7e-92 343.6 342 55.0
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.7e-92 343.6 339 55.8
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 2.9e-92 342.8 365 52.9
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.8e-92 342.4 342 54.7
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 6.5e-92 341.7 339 56.9
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 5.5e-91 338.6 345 54.8
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 3.5e-90 335.9 334 56.3
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 6.1e-90 335.1 346 53.8
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.3e-89 334.0 339 55.2
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 3.0e-89 332.8 247 71.7
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 9.7e-88 327.8 351 53.3
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.2e-87 326.6 305 57.0
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.1e-86 324.3 330 55.2
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 1.1e-86 324.3 336 53.9
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 3.1e-86 322.8 322 57.1
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 5.3e-86 322.0 334 53.9
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.5e-85 320.5 333 53.5
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.5e-85 320.5 327 54.7
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.6e-85 319.7 339 54.6
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.6e-85 319.7 339 54.6
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.6e-85 319.7 339 54.6
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 2.6e-85 319.7 322 56.8
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 5.0e-84 315.5 337 51.9
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-82 310.8 334 51.2
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.6e-82 310.5 338 52.1
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.6e-82 310.5 335 52.8
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.6e-82 310.5 339 51.9
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.1e-82 310.1 326 52.1
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.0e-81 307.8 334 53.9
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.4e-81 307.4 379 48.8
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 2.0e-80 303.5 275 54.9
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 2.5e-80 303.1 336 52.4
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 7.4e-80 301.6 339 52.2
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 7.4e-80 301.6 339 52.2
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 7.4e-80 301.6 249 63.5
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 9.7e-80 301.2 330 52.1
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 4.8e-79 298.9 333 52.9
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 2.4e-78 296.6 337 51.6
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 2.4e-78 296.6 335 51.0
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.5e-77 293.9 237 60.8
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 4.5e-77 292.4 335 50.1
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 7.7e-77 291.6 221 64.7
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 3.2e-75 286.2 341 50.4
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 5.5e-75 285.4 340 50.0
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 2.1e-74 283.5 341 50.1
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.9e-73 279.3 316 51.3
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.1e-72 277.7 335 49.0
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 6.3e-71 271.9 330 49.1
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 3.1e-70 269.6 330 49.4
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 5.3e-70 268.9 370 45.9
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.2e-69 267.7 316 50.6
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 3.5e-69 266.2 339 45.7
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 7.4e-64 248.4 299 48.5
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 4.8e-63 245.7 232 58.6
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.6e-61 240.0 320 46.6
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 3.8e-60 236.1 312 49.7
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 8.5e-60 235.0 218 60.1
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 4.1e-54 216.1 248 48.8
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 2.0e-53 213.8 160 65.6
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 4.5e-53 212.6 165 64.2
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 2.9e-52 209.9 164 62.2
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.9e-52 209.9 311 44.4
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.5e-51 206.8 330 41.8
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.2e-50 204.5 205 59.5
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.0e-50 201.8 205 59.5
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.3e-49 200.3 205 59.0
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.2e-48 198.0 333 40.2
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.1e-46 191.4 237 48.1
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 2.4e-46 190.3 339 38.6
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.0e-45 187.2 172 63.4
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 7.2e-43 178.7 174 59.2
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.3e-39 167.9 145 53.1
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.0e-37 160.6 209 47.8
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 5.9e-37 159.1 212 51.4
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.8e-37 158.7 127 56.7
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.7e-36 157.5 134 54.5
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.9e-36 156.4 148 60.1
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 3.5e-29 133.3 140 50.7
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.2e-26 124.8 121 51.2
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.6e-26 124.4 134 56.0
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.7e-26 122.9 138 52.2
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 3.7e-23 113.2 102 50.0
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 5.1e-20 102.8 97 52.6
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.1e-19 101.7 304 30.3
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.2e-18 98.2 225 32.9
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 6.4e-15 85.9 88 47.7
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 5.6e-11 72.8 229 28.8
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 9.6e-11 72.0 55 60.0
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.1e-09 68.6 60 61.7
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 3.2e-06 57.0 52 51.9


User provided reference genes

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