Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 7.0e-151 537.3 286 100.0
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 4.0e-146 521.5 289 97.2
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 2.3e-138 495.7 291 92.8
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 5.7e-129 464.5 274 85.4
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 2.7e-126 455.7 272 84.2
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 1.3e-125 453.4 266 84.6
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 1.2e-123 446.8 283 80.6
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 8.6e-109 397.5 276 73.2
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 2.1e-107 392.9 262 74.8
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 2.8e-107 392.5 263 72.6
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 6.2e-107 391.3 264 74.2
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 1.1e-106 390.6 254 76.0
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 1.1e-106 390.6 270 73.3
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 3.1e-106 389.0 260 75.4
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 1.2e-105 387.1 264 72.3
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 3.4e-105 385.6 259 73.4
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 3.4e-105 385.6 259 74.9
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 4.4e-105 385.2 272 72.1
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 5.8e-105 384.8 264 72.7
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 2.9e-104 382.5 254 74.8
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 3.7e-104 382.1 260 73.1
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 1.1e-103 380.6 267 70.8
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.4e-103 380.2 254 74.0
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 1.4e-103 380.2 266 69.9
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 5.4e-103 378.3 257 73.5
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 7.1e-103 377.9 261 72.4
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 9.2e-103 377.5 295 67.1
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 1.2e-102 377.1 287 67.9
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 4.6e-102 375.2 266 70.3
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 6.0e-102 374.8 259 70.3
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 6.0e-102 374.8 269 69.9
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 1.3e-101 373.6 262 71.8
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 3.9e-101 372.1 252 71.0
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 3.9e-101 372.1 270 69.3
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 3.3e-100 369.0 261 70.9
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 9.5e-100 367.5 272 68.8
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 9.5e-100 367.5 261 71.6
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 1.6e-99 366.7 265 72.1
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 2.1e-99 366.3 227 79.3
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 8.1e-99 364.4 263 70.3
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 1.4e-98 363.6 254 70.1
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 1.8e-98 363.2 267 67.4
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 4.0e-98 362.1 234 74.8
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 8.9e-98 360.9 248 72.2
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 1.2e-97 360.5 265 69.4
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 2.0e-97 359.8 305 62.3
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 2.6e-97 359.4 268 66.4
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 4.4e-97 358.6 262 67.9
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 5.8e-97 358.2 236 73.3
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 7.6e-97 357.8 248 71.4
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 7.6e-97 357.8 246 72.4
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 9.9e-97 357.5 262 67.6
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 1.3e-96 357.1 269 67.7
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 1.3e-96 357.1 260 67.7
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 2.2e-96 356.3 257 68.5
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 3.7e-96 355.5 262 67.6
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 4.9e-96 355.1 268 66.8
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 8.4e-96 354.4 268 65.7
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 1.1e-95 354.0 259 68.0
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 1.4e-95 353.6 287 63.4
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 1.9e-95 353.2 260 67.3
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 3.2e-95 352.4 261 67.8
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.2e-94 350.5 261 67.4
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 3.5e-94 349.0 290 63.1
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 6.0e-94 348.2 255 69.0
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 7.8e-94 347.8 261 67.0
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 1.3e-93 347.1 263 67.7
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 1.7e-93 346.7 288 61.1
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 2.3e-93 346.3 288 61.8
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 2.3e-93 346.3 262 66.4
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 3.0e-93 345.9 249 68.7
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 6.6e-93 344.7 261 67.0
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 2.5e-92 342.8 261 67.0
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 2.1e-91 339.7 231 71.9
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 8.1e-91 337.8 251 65.3
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 1.4e-90 337.0 251 65.3
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 1.8e-90 336.7 256 65.2
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 4.0e-90 335.5 251 66.1
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 4.0e-90 335.5 250 65.2
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 4.0e-90 335.5 251 65.3
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 4.0e-90 335.5 250 65.2
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 5.2e-90 335.1 226 72.6
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 3.4e-89 332.4 250 64.4
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 9.9e-89 330.9 258 65.5
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 3.2e-87 325.9 256 63.7
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 3.5e-86 322.4 231 68.0
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 4.6e-86 322.0 257 65.8
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 3.0e-85 319.3 224 70.1
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 5.1e-85 318.5 228 69.7
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 6.6e-85 318.2 258 63.6
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 1.9e-84 316.6 288 58.0
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 8.1e-83 311.2 241 64.7
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.8e-82 310.1 230 67.0
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 1.2e-81 307.4 275 57.5
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 9.9e-81 304.3 230 66.1
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 9.9e-81 304.3 281 59.8
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 1.3e-80 303.9 225 65.8
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 2.4e-79 299.7 231 62.8
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 3.6e-75 285.8 258 58.9
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 5.3e-74 282.0 241 60.2
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 4.5e-73 278.9 229 62.4
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 3.8e-72 275.8 257 53.7
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 8.4e-72 274.6 179 74.3
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 4.6e-70 268.9 256 55.1
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 1.3e-67 260.8 228 59.6
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 1.8e-58 230.3 204 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 3.4e-57 226.1 242 51.2
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 7.2e-55 218.4 196 56.1
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 2.7e-54 216.5 148 73.0
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 5.9e-49 198.7 215 50.7
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 4.7e-30 136.0 224 37.1
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.6e-22 110.9 93 64.5
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 6.1e-22 109.0 122 52.5
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 8.3e-19 98.6 228 30.3
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 8.0e-14 82.0 57 66.7
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 8.0e-14 82.0 57 66.7
PRCOL_00007103 Prasinoderma coloniale HOM05D006840 ORTHO05D008588 1.8e-10 70.9 230 28.3


User provided reference genes

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