Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025390 Solanum pennellii HOM05D002716 ORTHO05D394440 2.0e-50 202.2 106 100.0
PGSC0003DMG402006167 Solanum tuberosum HOM05D002716 ORTHO05D003324 6.2e-12 74.3 44 84.1
Solyc01g111700.2 Solanum lycopersicum HOM05D002716 ORTHO05D003324 3.1e-11 72.0 44 81.8
Sopen01g053740 Solanum pennellii HOM05D002716 ORTHO05D003324 8.9e-11 70.5 44 79.5
CAN.G588.90 Capsicum annuum HOM05D002716 ORTHO05D003324 2.9e-09 65.5 45 73.3
Peaxi162Scf00362g00532 Petunia axillaris HOM05D002716 ORTHO05D003324 3.8e-09 65.1 44 75.0
Nitab4.5_0000283g0490 Nicotiana tabacum HOM05D002716 ORTHO05D003324 1.4e-08 63.2 83 50.6
COL.COLO4_26099 Corchorus olitorius HOM05D002716 ORTHO05D003324 5.4e-08 61.2 44 70.5
Duzib093G1538 Durio zibethinus HOM05D002716 ORTHO05D003324 5.4e-08 61.2 44 70.5
Thecc.08G049700 Theobroma cacao HOM05D002716 ORTHO05D003324 5.4e-08 61.2 44 70.5
Duzib116G0707 Durio zibethinus HOM05D002716 ORTHO05D003324 9.2e-08 60.5 44 68.2
Migut.B00069 Erythranthe guttata HOM05D002716 ORTHO05D003324 2.1e-07 59.3 44 68.2
Migut.E00245 Erythranthe guttata HOM05D002716 ORTHO05D003324 2.1e-07 59.3 44 68.2
SalBow1G6245 Salvia bowleyana HOM05D002716 ORTHO05D003324 2.1e-07 59.3 44 68.2
PGR083G1040 Punica granatum HOM05D002716 ORTHO05D003324 2.7e-07 58.9 44 68.2
MBI17_g25602_MAGBIO Magnolia biondii HOM05D002716 ORTHO05D003324 3.5e-07 58.5 44 68.2
MBI17_g25603_MAGBIO Magnolia biondii HOM05D002716 ORTHO05D003324 3.5e-07 58.5 44 68.2
HPP92_022181 Vanilla planifolia HOM05D002716 ORTHO05D003324 3.5e-07 58.5 44 68.2
HPP92_022197 Vanilla planifolia HOM05D002716 ORTHO05D003324 3.5e-07 58.5 44 68.2
Zm00001eb039980 Zea mays HOM05D002716 ORTHO05D003324 3.5e-07 58.5 44 68.2
Zm00001eb202860 Zea mays HOM05D002716 ORTHO05D003324 3.5e-07 58.5 44 68.2
Atru.chr13.234 Acer truncatum HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Atru.chr5.3381 Acer truncatum HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Actinidia20519 Actinidia chinensis HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Aqoxy6G02093 Aquilegia oxysepala HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
arahy.Tifrunner.gnm1.ann1.8ZA7SM Arachis hypogaea HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
arahy.Tifrunner.gnm1.ann1.ZPAF0L Arachis hypogaea HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
CANSAT25G0170 Cannabis sativa HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Cpa.g.sc20.101 Carica papaya HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Cpa.g.sc26.279 Carica papaya HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Cfa005261 Carpinus fangiana HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
CiPaw.06G120800 Carya illinoinensis HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Ca_15472_v3 Cicer arietinum L. HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
ClCG02G003980 Citrullus lanatus HOM05D002716 ORTHO05D003324 4.6e-07 58.2 45 66.7
ClCG06G000440 Citrullus lanatus HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Ciclev10028313m.g Citrus clementina HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Cc04_g03370 Coffea canephora HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
COL.COLO4_17361 Corchorus olitorius HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Haze_02123 Corylus avellana HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
MELO3C013344.2 Cucumis melo HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
MELO3C022496.2 Cucumis melo HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
CsaV3_6G006240 Cucumis sativus L. HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
CsaV3_7G001120 Cucumis sativus L. HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
DCAR_022816 Daucus carota HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Dinv14119 Davidia involucrata HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Dinv41927 Davidia involucrata HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Duzib132G0164 Durio zibethinus HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
ECA246G3931 Erigeron canadensis HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Eucgr.F03722 Eucalyptus grandis HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Glyma.04G021500 Glycine max HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Glyma.06G021600 Glycine max HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Glyma.14G221600 Glycine max HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Gohir.A01G169700 Gossypium hirsutum HOM05D002716 ORTHO05D003324 4.6e-07 58.2 45 66.7
Gohir.D01G160800 Gossypium hirsutum HOM05D002716 ORTHO05D003324 4.6e-07 58.2 45 66.7
Gorai.002G199200 Gossypium raimondii HOM05D002716 ORTHO05D003324 4.6e-07 58.2 45 66.7
HanXRQChr15g0477921 Helianthus annuus HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
HanXRQChr15g0477991 Helianthus annuus HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
HanXRQChr17g0544181 Helianthus annuus HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Hma1.2p1_0032F.1_g019290 Hydrangea macrophylla HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Hma1.2p1_0163F.1_g072580 Hydrangea macrophylla HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Lsat_1_v5_gn_8_123101 Lactuca sativa HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Lj5C177G7 Lonicera japonica HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Lj1g0026889 Lotus japonicus HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
MD08G1008900 Malus domestica HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Manes.04G071700 Manihot esculenta HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Manes.11G097100 Manihot esculenta HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Medtr3g114480 Medicago truncatula HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Nn5g30817 Nelumbo nucifera HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Nitab4.5_0003698g0050 Nicotiana tabacum HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Oeu006691.1 Olea europaea HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Peaxi162Scf00078g01316 Petunia axillaris HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Peaxi162Scf00362g00546 Petunia axillaris HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Phvul.001G003600 Phaseolus vulgaris HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Phvul.009G019100 Phaseolus vulgaris HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Potri.004G176600 Populus trichocarpa HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Prupe.1G360600 Prunus persica HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
QL02p012612 Quercus lobata HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Sabra04G0118600 Salix brachista HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Sabra09G0106400 Salix brachista HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
Thecc.02G057700 Theobroma cacao HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
TPR.G38091 Trifolium pratense HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
TWI56G1090 Tripterygium wilfordii HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
TAR381G0159 Trochodendron aralioides HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
TAR628G1735 Trochodendron aralioides HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
GSVIVG01024003001 Vitis vinifera HOM05D002716 ORTHO05D003324 4.6e-07 58.2 44 68.2
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 6.0e-07 57.8 44 65.9
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 6.0e-07 57.8 44 65.9
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 6.0e-07 57.8 44 65.9
AUR62037104 Chenopodium quinoa HOM05D002716 ORTHO05D003324 6.0e-07 57.8 43 67.4
AUR62042366 Chenopodium quinoa HOM05D002716 ORTHO05D003324 6.0e-07 57.8 43 67.4
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 6.0e-07 57.8 44 65.9
Hund05156 Selenicereus undatus HOM05D002716 ORTHO05D003324 6.0e-07 57.8 43 67.4
Hund05163 Selenicereus undatus HOM05D002716 ORTHO05D003324 6.0e-07 57.8 43 67.4
Sc15g0004720 Simmondsia chinensis HOM05D002716 ORTHO05D003324 6.0e-07 57.8 43 67.4
AagrBONN_evm.TU.Sc2ySwM_117.3904 Anthoceros agrestis HOM05D002716 ORTHO05D003324 7.8e-07 57.4 43 67.4
Mapoly0015s0013 Marchantia polymorpha HOM05D002716 ORTHO05D003324 7.8e-07 57.4 45 64.4
SalBow5G3315 Salvia bowleyana HOM05D002716 ORTHO05D003324 7.8e-07 57.4 43 67.4
SalBow5G5506 Salvia bowleyana HOM05D002716 ORTHO05D003324 7.8e-07 57.4 43 67.4
SEGI_21425 Sequoiadendron giganteum HOM05D002716 ORTHO05D003324 7.8e-07 57.4 43 67.4
Actinidia21467 Actinidia chinensis HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
Actinidia32036 Actinidia chinensis HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
Actinidia39158 Actinidia chinensis HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
ATR0706G286 Amborella trichopoda HOM05D002716 ORTHO05D003324 1.0e-06 57.0 43 67.4
CSS0001298 Camellia sinensis var. sinensis HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
Gohir.D12G035700 Gossypium hirsutum HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
Gorai.008G037000 Gossypium raimondii HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
Lsat_1_v5_gn_3_47581 Lactuca sativa HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
Sed0016354 Sechium edule HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
SGA_v2.0_scaffold32G13291 Striga asiatica HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
TAR376G0703 Trochodendron aralioides HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
vmacro17316 Vaccinium macrocarpon HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
HPP92_020731 Vanilla planifolia HOM05D002716 ORTHO05D003324 1.0e-06 57.0 44 65.9
CiPaw.05G083700 Carya illinoinensis HOM05D002716 ORTHO05D003324 1.3e-06 56.6 44 65.9
CDE10G0545 Ceratophyllum demersum HOM05D002716 ORTHO05D003324 1.3e-06 56.6 43 67.4
Lalb_Chr19g0131531 Lupinus albus HOM05D002716 ORTHO05D003324 1.3e-06 56.6 44 65.9
Oeu015559.3 Olea europaea HOM05D002097 ORTHO05D002248 1.3e-06 56.6 51 58.8
Os09g0541900 Oryza sativa ssp. japonica HOM05D002716 ORTHO05D003324 1.3e-06 56.6 43 67.4
Psat5g012520 Pisum sativum HOM05D002716 ORTHO05D003324 1.3e-06 56.6 44 65.9
Rhsim11G0192900 Rhododendron simsii HOM05D002716 ORTHO05D003324 1.3e-06 56.6 44 65.9
Sed0024991 Sechium edule HOM05D002716 ORTHO05D003324 1.3e-06 56.6 44 65.9
Sed0027800 Sechium edule HOM05D002716 ORTHO05D003324 1.3e-06 56.6 44 65.9
unitig_0.g35 Utricularia gibba HOM05D002716 ORTHO05D003324 1.3e-06 56.6 40 70.0
vmacro02284 Vaccinium macrocarpon HOM05D002716 ORTHO05D003324 1.3e-06 56.6 45 64.4
EL10Ac1g02123 Beta vulgaris HOM05D002716 ORTHO05D003324 1.7e-06 56.2 43 65.1
CBR_g39761 Chara braunii HOM05D002716 ORTHO05D003324 1.7e-06 56.2 45 64.4
Glyma.17G260500 Glycine max HOM05D002716 ORTHO05D003324 1.7e-06 56.2 44 65.9
Potri.009G136900 Populus trichocarpa HOM05D002716 ORTHO05D003324 1.7e-06 56.2 44 65.9
SGA_v2.0_scaffold199G41204 Striga asiatica HOM05D002716 ORTHO05D003324 1.7e-06 56.2 43 65.1
SGA_v2.0_scaffold80G25858 Striga asiatica HOM05D002716 ORTHO05D003324 1.7e-06 56.2 43 65.1
TWI79G1042 Tripterygium wilfordii HOM05D002716 ORTHO05D003324 1.7e-06 56.2 44 65.9
Aa31LG4G6140 Aethionema arabicum HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
Aa31LG7G4600 Aethionema arabicum HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
BcaC08g47092 Brassica carinata HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
Thhalv10018459m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
MD05G1123400 Malus domestica HOM05D002716 ORTHO05D003324 2.3e-06 55.8 44 65.9
MD10G1126400 Malus domestica HOM05D002716 ORTHO05D003324 2.3e-06 55.8 44 65.9
Prupe.8G167300 Prunus persica HOM05D002716 ORTHO05D003324 2.3e-06 55.8 44 65.9
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
THA.LOC104811436 Tarenaya hassleriana HOM05D002716 ORTHO05D003324 2.3e-06 55.8 43 65.1
AagrBONN_evm.TU.Sc2ySwM_117.1325 Anthoceros agrestis HOM05D002716 ORTHO05D003324 3.0e-06 55.5 63 52.4
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 3.0e-06 55.5 45 62.2
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 3.0e-06 55.5 45 62.2
MSTRG.16922 Avicennia marina HOM05D002716 ORTHO05D003324 3.0e-06 55.5 43 65.1
CSS0022749 Camellia sinensis var. sinensis HOM05D002716 ORTHO05D003324 3.0e-06 55.5 44 63.6
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 3.0e-06 55.5 45 62.2
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 3.0e-06 55.5 45 62.2
TPR.G31025 Trifolium pratense HOM05D002716 ORTHO05D003324 3.0e-06 55.5 44 65.9
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 3.9e-06 55.1 43 65.1
MSTRG.27632 Avicennia marina HOM05D002716 ORTHO05D003324 3.9e-06 55.1 43 62.8
BolC7t42854H Brassica oleracea HOM05D002716 ORTHO05D003324 3.9e-06 55.1 44 61.4
CAN.G588.91 Capsicum annuum HOM05D002716 ORTHO05D003324 3.9e-06 55.1 44 65.9
Cc09_g09820 Coffea canephora HOM05D002716 ORTHO05D003324 3.9e-06 55.1 44 65.9
Haze_22686 Corylus avellana HOM05D002716 ORTHO05D003324 3.9e-06 55.1 44 65.9
Oeu019917.1 Olea europaea HOM05D002716 ORTHO05D003324 3.9e-06 55.1 44 65.9
Rhsim05G0053900 Rhododendron simsii HOM05D002716 ORTHO05D003324 3.9e-06 55.1 43 65.1
Sopen01g053750 Solanum pennellii HOM05D002716 ORTHO05D003324 3.9e-06 55.1 44 65.9
PGSC0003DMG401006167 Solanum tuberosum HOM05D002716 ORTHO05D003324 3.9e-06 55.1 44 65.9
GSVIVG01008761001 Vitis vinifera HOM05D002716 ORTHO05D003324 3.9e-06 55.1 44 63.6
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 5.1e-06 54.7 43 62.8
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 5.1e-06 54.7 43 62.8
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 5.1e-06 54.7 43 62.8
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 5.1e-06 54.7 43 62.8
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 5.1e-06 54.7 43 62.8
Nitab4.5_0000079g0260 Nicotiana tabacum HOM05D002716 ORTHO05D003324 5.1e-06 54.7 43 65.1
Nitab4.5_0000369g0060 Nicotiana tabacum HOM05D002716 ORTHO05D003324 5.1e-06 54.7 43 65.1
Psat3g119800 Pisum sativum HOM05D002716 ORTHO05D003324 5.1e-06 54.7 44 63.6
Psat6g001400 Pisum sativum HOM05D002716 ORTHO05D003324 5.1e-06 54.7 44 63.6
SMO115G0004 Selaginella moellendorffii HOM05D002716 ORTHO05D003324 5.1e-06 54.7 43 62.8
TPR.G26388 Trifolium pratense HOM05D002716 ORTHO05D003324 5.1e-06 54.7 44 63.6
Ah.11g040060 Amaranthus hybridus HOM05D002716 ORTHO05D003324 6.6e-06 54.3 39 69.2
Cre06.g275650 Chlamydomonas reinhardtii HOM05D002716 ORTHO05D003324 6.6e-06 54.3 45 60.0
Pp3c17_19240 Physcomitrium patens HOM05D002716 ORTHO05D003324 8.6e-06 53.9 43 62.8
Pp3c1_37270 Physcomitrium patens HOM05D002716 ORTHO05D003324 8.6e-06 53.9 43 62.8
Pp3c1_37278 Physcomitrium patens HOM05D002716 ORTHO05D003324 8.6e-06 53.9 43 62.8
Pp3c2_4780 Physcomitrium patens HOM05D002716 ORTHO05D003324 8.6e-06 53.9 43 62.8
QL11p051055 Quercus lobata HOM05D002716 ORTHO05D003324 8.6e-06 53.9 44 63.6
SHI05761 Sapria himalayana HOM05D002716 ORTHO05D003324 8.6e-06 53.9 44 63.6


User provided reference genes

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