Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025270 Solanum pennellii HOM05D000081 ORTHO05D017261 5.6e-77 290.8 141 100.0
Solyc04g056365.1 Solanum lycopersicum HOM05D000081 ORTHO05D017261 3.4e-58 228.4 115 95.7
Peaxi162Scf00344g00811 Petunia axillaris HOM05D000081 ORTHO05D000036 4.2e-24 115.2 177 46.3
Aqoxy2G04012 Aquilegia oxysepala HOM05D000081 ORTHO05D000036 3.9e-14 82.0 122 42.6
MBI11_g39357_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D017261 1.3e-12 77.0 70 60.0
SalBow1G5375 Salvia bowleyana HOM05D000081 ORTHO05D017261 1.3e-12 77.0 100 45.0
MD12G1260600 Malus domestica HOM05D000081 ORTHO05D000036 2.2e-12 76.3 74 59.5
Prupe.6G361300 Prunus persica HOM05D000081 ORTHO05D000036 2.2e-12 76.3 78 57.7
FAN09G3529 Fragaria x ananassa HOM05D000081 ORTHO05D000036 3.7e-12 75.5 104 48.1
FAN14G0041 Fragaria x ananassa HOM05D000081 ORTHO05D000036 3.7e-12 75.5 104 48.1
Cfa006263 Carpinus fangiana HOM05D000081 ORTHO05D000036 6.3e-12 74.7 79 54.4
FvH4_6g00500 Fragaria vesca HOM05D000081 ORTHO05D000036 6.3e-12 74.7 104 47.1
CiPaw.08G115100 Carya illinoinensis HOM05D000081 ORTHO05D000036 8.2e-12 74.3 76 55.3
FAN02G3122 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.1e-11 73.9 125 40.0
FAN05G4899 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.4e-11 73.6 125 40.0
Oeu023174.1 Olea europaea HOM05D000081 ORTHO05D000036 1.4e-11 73.6 79 55.7
QL01p046994 Quercus lobata HOM05D000081 ORTHO05D000036 1.4e-11 73.6 77 51.9
TWI18G0115 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 1.4e-11 73.6 88 51.1
TAR362G1075 Trochodendron aralioides HOM05D000081 ORTHO05D000036 1.4e-11 73.6 76 56.6
COL.COLO4_19823 Corchorus olitorius HOM05D000081 ORTHO05D000036 2.4e-11 72.8 120 45.8
MD04G1244700 Malus domestica HOM05D000081 ORTHO05D000036 3.1e-11 72.4 74 58.1
Nitab4.5_0000083g0150 Nicotiana tabacum HOM05D000081 ORTHO05D000036 7.0e-11 71.2 69 58.0
RcHm_v2.0_Chr3g0447881 Rosa chinensis HOM05D000081 ORTHO05D000036 7.0e-11 71.2 123 38.2
Gohir.A13G154100 Gossypium hirsutum HOM05D000081 ORTHO05D000036 1.6e-10 70.1 71 54.9
Gohir.D13G158700 Gossypium hirsutum HOM05D000081 ORTHO05D000036 1.6e-10 70.1 71 54.9
Gorai.013G179400 Gossypium raimondii HOM05D000081 ORTHO05D000036 1.6e-10 70.1 71 54.9
PSO675G4386 Papaver somniferum HOM05D000081 ORTHO05D000036 1.6e-10 70.1 123 39.0
MSTRG.9247 Avicennia marina HOM05D000081 ORTHO05D000036 2.0e-10 69.7 83 50.6
CSS0047203 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 2.6e-10 69.3 72 54.2
PSO063G2392 Papaver somniferum HOM05D000081 ORTHO05D000036 2.6e-10 69.3 106 40.6
Gohir.D04G025600 Gossypium hirsutum HOM05D000081 ORTHO05D000036 3.5e-10 68.9 78 50.0
Gorai.012G028200 Gossypium raimondii HOM05D000081 ORTHO05D000036 3.5e-10 68.9 78 50.0
Medtr7g080020 Medicago truncatula HOM05D000081 ORTHO05D000036 7.7e-10 67.8 99 46.5
Thecc.05G199200 Theobroma cacao HOM05D000081 ORTHO05D000036 7.7e-10 67.8 119 41.2
Gohir.A05G390000 Gossypium hirsutum HOM05D000081 ORTHO05D000036 1.0e-09 67.4 78 50.0
Duzib128G1403 Durio zibethinus HOM05D000081 ORTHO05D000036 1.3e-09 67.0 85 48.2
Medtr7g080000 Medicago truncatula HOM05D000081 ORTHO05D000036 1.7e-09 66.6 81 54.3
VMungo1383G3595 Vigna mungo HOM05D000081 ORTHO05D000036 1.7e-09 66.6 75 56.0
Ca_07987_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 2.2e-09 66.2 80 50.0
PSO782G0489 Papaver somniferum HOM05D000081 ORTHO05D000036 2.2e-09 66.2 105 41.0
TAR629G1661 Trochodendron aralioides HOM05D000081 ORTHO05D000036 2.2e-09 66.2 104 42.3
Haze_04555 Corylus avellana HOM05D000081 ORTHO05D000036 2.9e-09 65.9 79 49.4
Gohir.D08G036600 Gossypium hirsutum HOM05D000081 ORTHO05D000036 2.9e-09 65.9 92 43.5
Hund07346 Selenicereus undatus HOM05D000081 ORTHO05D000036 2.9e-09 65.9 79 51.9
PGR119G1203 Punica granatum HOM05D000081 ORTHO05D000036 5.0e-09 65.1 84 47.6
HanXRQChr08g0232861 Helianthus annuus HOM05D000081 ORTHO05D000036 6.5e-09 64.7 86 44.2
Gohir.A08G026100 Gossypium hirsutum HOM05D000081 ORTHO05D000036 8.5e-09 64.3 92 42.4
Gorai.004G034600 Gossypium raimondii HOM05D000081 ORTHO05D000036 8.5e-09 64.3 92 42.4
TPR.G30687 Trifolium pratense HOM05D000002 ORTHO05D000001 8.5e-09 64.3 80 53.8
Cfa016968 Carpinus fangiana HOM05D000081 ORTHO05D000036 1.1e-08 63.9 97 42.3
Eucgr.F01981 Eucalyptus grandis HOM05D000081 ORTHO05D000036 1.1e-08 63.9 124 38.7
PGR083G2605 Punica granatum HOM05D000081 ORTHO05D000036 1.1e-08 63.9 104 39.4
Lj1C902G5 Lonicera japonica HOM05D000081 ORTHO05D000036 1.5e-08 63.5 82 43.9
Potri.013G086000 Populus trichocarpa HOM05D000081 ORTHO05D000036 1.5e-08 63.5 75 48.0
TAR627G0177 Trochodendron aralioides HOM05D000081 ORTHO05D000036 1.5e-08 63.5 86 46.5
PSO017G6271 Papaver somniferum HOM05D000081 ORTHO05D000036 2.5e-08 62.8 123 38.2
Atru.chr12.1782 Acer truncatum HOM05D000081 ORTHO05D000036 3.2e-08 62.4 70 52.9
ClCG10G003860 Citrullus lanatus HOM05D000081 ORTHO05D000036 4.2e-08 62.0 97 39.2
ClCG10G003980 Citrullus lanatus HOM05D000081 ORTHO05D000036 4.2e-08 62.0 97 39.2
ClCG10G004000 Citrullus lanatus HOM05D000081 ORTHO05D000036 4.2e-08 62.0 97 39.2
Sabra11G0137500 Salix brachista HOM05D000081 ORTHO05D000036 4.2e-08 62.0 81 45.7
Sabra16G0321000 Salix brachista HOM05D000081 ORTHO05D000036 4.2e-08 62.0 97 41.2
SGA_v2.0_scaffold186G40231 Striga asiatica HOM05D000081 ORTHO05D000036 4.2e-08 62.0 100 41.0
Hma1.2p1_0193F.1_g084400 Hydrangea macrophylla HOM05D000081 ORTHO05D000036 5.5e-08 61.6 79 44.3
HanXRQChr05g0160711 Helianthus annuus HOM05D000081 ORTHO05D000036 7.2e-08 61.2 88 43.2
MBI11_g12228_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D000036 7.2e-08 61.2 115 40.0
Phvul.008G054100 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 7.2e-08 61.2 82 50.0
MELO3C014066.2 Cucumis melo HOM05D000081 ORTHO05D000036 9.4e-08 60.8 123 35.0
MBI15_g36009_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D000036 9.4e-08 60.8 154 31.8
Potri.001G472800 Populus trichocarpa HOM05D000081 ORTHO05D000036 9.4e-08 60.8 84 45.2
Sed0001427 Sechium edule HOM05D000081 ORTHO05D000036 9.4e-08 60.8 92 41.3
TAR626G1921 Trochodendron aralioides HOM05D000081 ORTHO05D000036 9.4e-08 60.8 70 50.0
Cpa.g.sc12.58 Carica papaya HOM05D000081 ORTHO05D000036 1.2e-07 60.5 97 41.2
FAN21G1723 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.2e-07 60.5 78 43.6
Lj8C184T7 Lonicera japonica HOM05D000081 ORTHO05D000036 1.2e-07 60.5 75 48.0
Psat3g138240 Pisum sativum HOM05D000081 ORTHO05D000036 1.2e-07 60.5 76 52.6
Sed0018136 Sechium edule HOM05D000081 ORTHO05D000036 1.2e-07 60.5 108 38.0
CSS0041811 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 1.6e-07 60.1 119 36.1
Haze_09922 Corylus avellana HOM05D000081 ORTHO05D000036 1.6e-07 60.1 87 43.7
CsaV3_3G003840 Cucumis sativus L. HOM05D000081 ORTHO05D000036 1.6e-07 60.1 125 33.6
HanXRQChr17g0539151 Helianthus annuus HOM05D000081 ORTHO05D017261 1.6e-07 60.1 99 40.4
Manes.05G203900 Manihot esculenta HOM05D000081 ORTHO05D000036 1.6e-07 60.1 74 47.3
Manes.01G007600 Manihot esculenta HOM05D000081 ORTHO05D000036 2.1e-07 59.7 90 41.1
arahy.Tifrunner.gnm1.ann1.A3ULYL Arachis hypogaea HOM05D000081 ORTHO05D000036 2.7e-07 59.3 86 47.7
Glyma.04G115500 Glycine max HOM05D000081 ORTHO05D000036 2.7e-07 59.3 83 44.6
Glyma.09G250500 Glycine max HOM05D000081 ORTHO05D000036 2.7e-07 59.3 107 42.1
GSVIVG01014854001 Vitis vinifera HOM05D000081 ORTHO05D000036 2.7e-07 59.3 102 40.2
Lalb_Chr15g0079871 Lupinus albus HOM05D000081 ORTHO05D000036 3.6e-07 58.9 102 36.3
Nn1g07617 Nelumbo nucifera HOM05D000081 ORTHO05D000036 3.6e-07 58.9 110 36.4
Nitab4.5_0008886g0030 Nicotiana tabacum HOM05D000081 ORTHO05D000036 3.6e-07 58.9 89 42.7
TPR.G18592 Trifolium pratense HOM05D000081 ORTHO05D000036 3.6e-07 58.9 81 46.9
Rhsim04G0007000 Rhododendron simsii HOM05D000081 ORTHO05D000036 4.7e-07 58.5 97 39.2
CANSAT11G1669 Cannabis sativa HOM05D000081 ORTHO05D000036 6.1e-07 58.2 88 43.2
Nn1g09752 Nelumbo nucifera HOM05D000081 ORTHO05D000036 6.1e-07 58.2 96 42.7
Duzib213G0494 Durio zibethinus HOM05D000081 ORTHO05D000036 8.0e-07 57.8 94 38.3
Actinidia30343 Actinidia chinensis HOM05D000081 ORTHO05D000036 1.0e-06 57.4 108 36.1
Carub.0008s1593 Capsella rubella HOM05D000081 ORTHO05D000036 1.0e-06 57.4 79 45.6
CAN.G623.79 Capsicum annuum HOM05D000081 ORTHO05D000036 1.0e-06 57.4 81 40.7
Cc05_g15790 Coffea canephora HOM05D000081 ORTHO05D000036 1.0e-06 57.4 95 36.8
DCAR_023855 Daucus carota HOM05D000081 ORTHO05D000036 1.0e-06 57.4 84 44.0
Dinv19637 Davidia involucrata HOM05D000081 ORTHO05D000036 1.0e-06 57.4 81 44.4
Lalb_Chr03g0038601 Lupinus albus HOM05D000081 ORTHO05D017261 1.0e-06 57.4 52 57.7
Potri.011G169300 Populus trichocarpa HOM05D000081 ORTHO05D000036 1.0e-06 57.4 91 45.1
QL08p000375 Quercus lobata HOM05D000081 ORTHO05D000036 1.0e-06 57.4 76 43.4
Sc06g0005040 Simmondsia chinensis HOM05D000081 ORTHO05D000036 1.0e-06 57.4 71 49.3
COL.COLO4_07795 Corchorus olitorius HOM05D000081 ORTHO05D000036 1.4e-06 57.0 80 40.0
MBI14_g10258_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D000036 1.4e-06 57.0 107 37.4
MD03G1044400 Malus domestica HOM05D000081 ORTHO05D000036 1.4e-06 57.0 76 47.4
Oeu062668.1 Olea europaea HOM05D000081 ORTHO05D000036 1.4e-06 57.0 80 41.2
vmacro09795 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 1.4e-06 57.0 79 41.8
arahy.Tifrunner.gnm1.ann1.62XZQ4 Arachis hypogaea HOM05D000081 ORTHO05D000036 1.8e-06 56.6 98 35.7
CDE06G0556 Ceratophyllum demersum HOM05D000081 ORTHO05D000036 1.8e-06 56.6 76 43.4
Dinv42531 Davidia involucrata HOM05D000081 ORTHO05D000036 1.8e-06 56.6 79 41.8
FvH4_3g41430 Fragaria vesca HOM05D000081 ORTHO05D000036 1.8e-06 56.6 76 47.4
FAN11G0082 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.8e-06 56.6 76 47.4
FAN25G3806 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.8e-06 56.6 76 47.4
Nitab4.5_0000294g0180 Nicotiana tabacum HOM05D000081 ORTHO05D000036 1.8e-06 56.6 77 41.6
Nitab4.5_0001732g0010 Nicotiana tabacum HOM05D000081 ORTHO05D000036 1.8e-06 56.6 77 41.6
Thecc.07G000700 Theobroma cacao HOM05D000081 ORTHO05D000036 1.8e-06 56.6 81 40.7
FAN16G2882 Fragaria x ananassa HOM05D000081 ORTHO05D000036 2.3e-06 56.2 84 45.2
Oeu055358.1 Olea europaea HOM05D000081 ORTHO05D000036 2.3e-06 56.2 75 48.0
Prupe.6G036300 Prunus persica HOM05D000081 ORTHO05D000036 2.3e-06 56.2 86 44.2
Lj3g0012883 Lotus japonicus HOM05D000081 ORTHO05D000036 3.0e-06 55.8 97 39.2
Lalb_Chr18g0048721 Lupinus albus HOM05D000081 ORTHO05D000036 3.0e-06 55.8 126 32.5
Nitab4.5_0000163g0350 Nicotiana tabacum HOM05D000081 ORTHO05D000036 3.0e-06 55.8 89 41.6
SGA_v2.0_scaffold92G28150 Striga asiatica HOM05D000081 ORTHO05D000036 3.0e-06 55.8 69 46.4
TAR626G0547 Trochodendron aralioides HOM05D000081 ORTHO05D000036 3.0e-06 55.8 80 43.8
arahy.Tifrunner.gnm1.ann1.WH9G9U Arachis hypogaea HOM05D000081 ORTHO05D000036 4.0e-06 55.5 33 78.8
SGA_v2.0_scaffold49G18164 Striga asiatica HOM05D000081 ORTHO05D000036 4.0e-06 55.5 86 40.7
CDE03G0222 Ceratophyllum demersum HOM05D000081 ORTHO05D000036 5.2e-06 55.1 88 37.5
Lsat_1_v5_gn_9_49041 Lactuca sativa HOM05D000081 ORTHO05D000036 5.2e-06 55.1 72 51.4
Lalb_Chr04g0259421 Lupinus albus HOM05D000081 ORTHO05D000036 5.2e-06 55.1 105 36.2
Peaxi162Scf00232g00810 Petunia axillaris HOM05D000081 ORTHO05D000036 5.2e-06 55.1 76 40.8
THA.LOC104813472 Tarenaya hassleriana HOM05D000081 ORTHO05D000036 5.2e-06 55.1 99 41.4
arahy.Tifrunner.gnm1.ann1.SLD8K7 Arachis hypogaea HOM05D000081 ORTHO05D000036 6.7e-06 54.7 100 39.0
MSTRG.13054 Avicennia marina HOM05D000081 ORTHO05D000036 6.7e-06 54.7 88 37.5
Migut.M01577 Erythranthe guttata HOM05D000081 ORTHO05D000036 6.7e-06 54.7 92 40.2
Solyc07g066220.3 Solanum lycopersicum HOM05D000081 ORTHO05D000036 6.7e-06 54.7 96 37.5
Sopen07g034400 Solanum pennellii HOM05D000081 ORTHO05D000036 6.7e-06 54.7 96 37.5
arahy.Tifrunner.gnm1.ann1.691ACA Arachis hypogaea HOM05D000081 ORTHO05D000036 8.8e-06 54.3 85 41.2
arahy.Tifrunner.gnm1.ann1.M3PRRA Arachis hypogaea HOM05D000081 ORTHO05D000036 8.8e-06 54.3 98 34.7
Ca_14126_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 8.8e-06 54.3 77 41.6
DCAR_016808 Daucus carota HOM05D000081 ORTHO05D000036 8.8e-06 54.3 72 41.7
Glyma.06G320700 Glycine max HOM05D000081 ORTHO05D000036 8.8e-06 54.3 76 44.7
Oeu061793.1 Olea europaea HOM05D000081 ORTHO05D000036 8.8e-06 54.3 73 43.8
Hund21900 Selenicereus undatus HOM05D000081 ORTHO05D000036 8.8e-06 54.3 97 38.1
TWI39G1194 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 8.8e-06 54.3 92 40.2
Zm00001eb079950 Zea mays HOM05D000081 ORTHO05D000036 8.8e-06 54.3 88 40.9


User provided reference genes

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