Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 3.9e-69 264.6 129 100.0
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.7e-67 258.1 129 96.9
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.4e-58 228.8 136 84.6
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.4e-55 219.5 136 85.3
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.0e-53 213.4 137 81.8
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 2.6e-52 208.8 136 80.1
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.3e-51 206.5 137 79.6
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.3e-51 206.5 125 84.8
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 1.5e-47 193.0 135 71.9
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.2e-45 184.5 139 70.5
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.5e-39 164.5 122 72.1
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 9.4e-39 163.7 128 70.3
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.7e-32 142.9 112 68.8
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.5e-32 141.0 110 70.0
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 5.5e-31 137.9 137 51.8
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 6.1e-30 134.4 139 54.7
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 1.0e-29 133.7 137 55.5
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.0e-29 133.7 138 57.2
PGSC0003DMG400001889 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.0e-29 132.1 83 83.1
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.4e-21 106.7 135 45.2
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.4e-21 106.7 139 44.6
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 4.0e-21 105.1 135 45.9
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 6.8e-21 104.4 115 49.6
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.2e-20 103.6 134 44.8
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 2.6e-20 102.4 139 42.4
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 2.6e-20 102.4 139 42.4
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 3.4e-20 102.1 133 46.6
Peaxi162Scf00212g00104 Petunia axillaris HOM05D003474 ORTHO05D003971 3.4e-20 102.1 85 68.2
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 4.4e-20 101.7 139 42.4
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 4.4e-20 101.7 139 42.4
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 5.7e-20 101.3 139 42.4
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 9.8e-20 100.5 134 41.8
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 1.3e-19 100.1 138 42.0
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.2e-19 99.4 148 41.9
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.4e-19 97.8 148 42.6
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 8.3e-19 97.4 149 40.9
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.4e-18 96.7 147 41.5
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.4e-18 96.7 135 43.0
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 1.4e-18 96.7 141 44.0
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.8e-18 96.3 97 56.7
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 2.4e-18 95.9 141 42.6
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 2.4e-18 95.9 146 41.1
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 3.2e-18 95.5 138 43.5
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 3.2e-18 95.5 142 40.8
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.1e-18 95.1 146 42.5
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 4.1e-18 95.1 136 40.4
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 4.1e-18 95.1 142 40.1
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 4.1e-18 95.1 138 42.8
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 5.4e-18 94.7 131 41.2
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 9.2e-18 94.0 146 41.8
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.0e-17 92.8 148 40.5
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.5e-17 92.0 147 41.5
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 4.6e-17 91.7 141 41.1
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 7.8e-17 90.9 139 39.6
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.3e-16 90.1 138 40.6
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 1.3e-16 90.1 135 39.3
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.7e-16 89.7 142 42.3
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 2.3e-16 89.4 137 39.4
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 2.3e-16 89.4 144 42.4
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 2.3e-16 89.4 139 41.7
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 8.6e-16 87.4 134 41.8
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 1.5e-15 86.7 148 39.2
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.5e-15 86.7 139 42.4
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 1.9e-15 86.3 134 40.3
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 3.3e-15 85.5 138 39.9
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 3.3e-15 85.5 138 39.9
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 3.3e-15 85.5 138 39.9
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 4.3e-15 85.1 135 43.0
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 4.3e-15 85.1 143 37.8
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 5.6e-15 84.7 135 40.7
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 5.6e-15 84.7 144 40.3
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 7.3e-15 84.3 141 37.6
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 7.3e-15 84.3 146 36.3
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 7.3e-15 84.3 145 40.7
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 9.5e-15 84.0 132 40.9
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 1.2e-14 83.6 130 42.3
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.6e-14 83.2 146 36.3
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.6e-14 83.2 132 40.2
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.6e-14 83.2 138 38.4
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 1.6e-14 83.2 138 40.6
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.6e-14 83.2 135 40.7
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 1.6e-14 83.2 127 43.3
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.1e-14 82.8 132 40.2
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.8e-14 82.4 141 38.3
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.8e-14 82.4 141 38.3
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.8e-14 82.4 138 39.1
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 3.6e-14 82.0 131 38.9
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 4.7e-14 81.6 131 38.9
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.2e-14 81.3 134 40.3
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.2e-14 81.3 132 40.9
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 1.1e-13 80.5 162 36.4
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.4e-13 80.1 136 38.2
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 1.4e-13 80.1 135 39.3
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.8e-13 79.7 163 35.0
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.8e-13 79.7 163 35.0
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 1.8e-13 79.7 137 39.4
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 2.3e-13 79.3 137 34.3
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 2.3e-13 79.3 131 37.4
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 3.1e-13 79.0 148 38.5
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 3.1e-13 79.0 147 34.7
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 3.1e-13 79.0 136 33.1
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 4.0e-13 78.6 126 38.1
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 4.0e-13 78.6 135 38.5
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 4.0e-13 78.6 140 36.4
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.2e-13 78.2 125 38.4
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 5.2e-13 78.2 136 39.0
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 8.9e-13 77.4 125 38.4
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 8.9e-13 77.4 130 36.9
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.2e-12 77.0 135 38.5
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.2e-12 77.0 138 37.7
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.5e-12 76.6 125 38.4
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.0e-12 76.3 125 37.6
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 2.0e-12 76.3 136 34.6
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 3.4e-12 75.5 131 36.6
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 5.8e-12 74.7 132 36.4
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 5.8e-12 74.7 131 35.9
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.8e-12 74.7 131 38.9
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.8e-12 74.7 131 38.9
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 5.8e-12 74.7 131 37.4
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.3e-11 73.6 131 36.6
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.7e-11 73.2 103 39.8
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.7e-11 73.2 105 41.0
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 1.7e-11 73.2 114 38.6
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 2.2e-11 72.8 135 38.5
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.9e-11 72.4 129 34.1
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 2.9e-11 72.4 147 31.3
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 3.7e-11 72.0 133 37.6
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 3.7e-11 72.0 127 34.6
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.7e-11 72.0 133 39.1
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 4.9e-11 71.6 120 33.3
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 4.9e-11 71.6 131 35.1
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 6.4e-11 71.2 134 35.1
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 6.4e-11 71.2 134 35.1
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 6.4e-11 71.2 134 35.1
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 6.4e-11 71.2 133 36.8
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 8.3e-11 70.9 125 36.8
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 8.3e-11 70.9 131 35.1
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 8.3e-11 70.9 135 35.6
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.1e-10 70.5 137 35.0
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 1.4e-10 70.1 129 38.0
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 1.9e-10 69.7 136 31.6
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 2.4e-10 69.3 137 35.0
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 3.2e-10 68.9 131 33.6
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.4e-10 68.2 133 37.6
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 7.0e-10 67.8 131 35.1
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 9.2e-10 67.4 136 36.0
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 9.2e-10 67.4 107 34.6
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 1.2e-09 67.0 137 34.3
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.2e-09 67.0 133 39.1
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.6e-09 66.6 135 36.3
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 1.6e-09 66.6 131 32.8
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.7e-09 65.9 139 33.8
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 3.5e-09 65.5 131 32.8
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 6.0e-09 64.7 137 34.3
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 7.8e-09 64.3 118 33.1
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.8e-09 64.3 137 34.3
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.0e-08 63.9 135 34.8
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.0e-08 63.9 131 32.8
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 2.3e-08 62.8 113 37.2
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 3.0e-08 62.4 134 33.6
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 3.9e-08 62.0 112 35.7
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 3.9e-08 62.0 133 33.8
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 8.6e-08 60.8 131 32.1
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 8.6e-08 60.8 131 32.1
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.5e-07 60.1 131 31.3
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.5e-07 60.1 133 33.1
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.3e-07 58.9 131 31.3
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 5.6e-07 58.2 131 31.3
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 5.6e-07 58.2 131 30.5
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 5.6e-07 58.2 131 30.5
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 9.5e-07 57.4 112 33.9
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 1.2e-06 57.0 129 29.5
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 3.6e-06 55.5 105 34.3
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 6.2e-06 54.7 134 35.1


User provided reference genes

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