Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.0e-182 643.7 418 100.0
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.6e-166 587.8 418 89.5
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.9e-129 465.3 440 72.0
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.9e-113 412.9 388 65.7
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 6.1e-95 352.1 244 79.1
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.0e-94 351.3 351 61.3
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 2.5e-93 346.7 410 55.4
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 3.3e-93 346.3 421 56.5
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.2e-92 343.6 246 77.2
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 3.7e-92 342.8 311 63.3
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 4.8e-92 342.4 421 56.1
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 8.2e-92 341.7 429 53.1
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 1.1e-91 341.3 247 77.3
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.0e-90 337.0 245 69.8
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.0e-90 337.0 244 69.7
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 2.0e-90 337.0 244 70.1
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 5.9e-90 335.5 242 69.8
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.7e-90 335.1 244 69.7
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 6.5e-89 332.0 244 68.9
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 6.5e-89 332.0 244 68.9
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.1e-88 331.3 238 73.1
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.4e-88 330.9 323 57.9
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 1.4e-88 330.9 239 72.4
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.4e-88 330.9 241 69.7
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.9e-88 330.5 244 68.4
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 2.5e-88 330.1 244 68.0
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 9.4e-88 328.2 349 53.9
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 1.2e-87 327.8 247 68.8
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.2e-87 327.8 244 67.6
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.6e-87 327.4 244 66.8
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.6e-87 327.4 244 66.8
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.6e-87 327.4 239 68.6
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 2.7e-87 326.6 244 66.8
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 2.7e-87 326.6 244 66.8
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.7e-87 326.6 244 66.8
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.6e-87 326.2 412 52.2
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 3.6e-87 326.2 247 67.2
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 4.6e-87 325.9 326 60.4
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 7.9e-87 325.1 360 55.6
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.4e-86 324.3 393 51.9
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 3.0e-86 323.2 245 67.3
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 5.1e-86 322.4 245 66.9
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 5.1e-86 322.4 245 69.8
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 6.7e-86 322.0 367 56.9
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 8.8e-86 321.6 245 66.9
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.1e-85 321.2 422 49.5
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.1e-85 321.2 354 57.6
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.5e-85 320.9 316 61.1
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.0e-85 320.5 241 68.9
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.0e-85 320.5 244 67.2
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.0e-85 320.5 328 59.8
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 2.6e-85 320.1 245 66.5
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 2.6e-85 320.1 245 66.5
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 2.6e-85 320.1 328 57.6
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.6e-85 320.1 349 58.7
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 3.3e-85 319.7 359 57.1
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 4.4e-85 319.3 378 55.0
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 4.4e-85 319.3 247 66.4
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 7.4e-85 318.5 247 65.6
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 9.7e-85 318.2 350 55.4
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.7e-84 317.4 384 52.3
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.7e-84 317.4 341 54.5
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.8e-84 316.6 365 54.5
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.8e-84 316.6 345 55.9
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.7e-84 316.2 372 52.7
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 6.3e-84 315.5 353 52.7
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 8.2e-84 315.1 244 66.0
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.8e-83 313.9 369 52.6
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.8e-83 313.9 340 55.3
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.4e-83 313.5 378 55.6
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 3.1e-83 313.2 244 65.6
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 4.1e-83 312.8 343 54.5
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.9e-83 312.0 285 58.9
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 6.9e-83 312.0 238 68.5
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 6.9e-83 312.0 305 55.7
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 6.9e-83 312.0 366 51.4
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.2e-82 311.2 348 53.4
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.2e-82 311.2 341 54.0
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.5e-82 310.8 397 49.9
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.0e-82 310.5 244 65.6
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.0e-81 308.1 362 52.8
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.0e-81 308.1 423 50.4
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 1.0e-81 308.1 318 54.4
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.7e-81 307.4 240 63.8
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 5.0e-81 305.8 420 46.4
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 6.5e-81 305.4 378 49.5
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 8.5e-81 305.1 318 55.7
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 8.5e-81 305.1 340 56.5
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.1e-80 304.7 397 53.1
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.2e-79 301.2 345 53.9
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.1e-79 300.4 343 53.6
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 2.7e-79 300.1 287 61.0
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 2.7e-79 300.1 385 53.0
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 2.7e-79 300.1 354 50.3
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.6e-79 299.7 359 51.8
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.1e-79 298.9 348 53.2
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.4e-78 297.7 242 65.7
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 3.9e-78 296.2 349 52.4
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 3.9e-78 296.2 374 49.7
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 5.2e-78 295.8 340 52.1
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 2.0e-77 293.9 341 51.3
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 3.3e-77 293.1 248 63.3
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.3e-77 293.1 333 52.6
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.3e-76 291.2 349 51.9
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.1e-75 288.1 350 49.7
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 1.1e-75 288.1 315 52.7
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.6e-74 284.3 226 65.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 2.6e-74 283.5 243 58.8
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.0e-73 281.6 213 68.5
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 3.8e-73 279.6 226 62.4
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.5e-72 277.7 233 62.7
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 7.2e-72 275.4 232 60.3
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 9.4e-72 275.0 322 50.3
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 9.4e-72 275.0 345 51.6
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 6.1e-71 272.3 225 60.9
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.1e-67 261.5 325 48.6
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 4.5e-58 229.6 292 48.3
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 7.7e-58 228.8 465 44.5
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 7.2e-56 222.2 236 49.6
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 8.9e-46 188.7 294 40.5
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 4.1e-43 179.9 243 40.7
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.6e-42 177.9 238 40.8
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.7e-41 174.5 231 41.6
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.5e-37 161.4 112 66.1
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 2.2e-36 157.5 219 37.4
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 7.8e-34 149.1 240 36.7
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 1.3e-33 148.3 237 37.6
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 2.1e-31 141.0 87 75.9
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.4e-30 138.3 232 34.9
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 5.2e-30 136.3 120 58.3
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.0e-29 134.4 215 35.3
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.2e-27 127.1 211 31.8
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 5.1e-25 119.8 213 34.3
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 2.6e-21 107.5 160 39.4
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 2.2e-20 104.4 206 32.5
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.9e-19 101.3 222 26.1
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.6e-18 98.2 80 60.0
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 3.5e-18 97.1 211 26.1
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.5e-16 91.7 147 44.2
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.3e-12 78.6 225 29.8
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.3e-12 78.6 127 40.2
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 2.4e-11 74.3 221 27.6
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 2.1e-10 71.2 40 72.5
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 2.1e-10 71.2 108 38.0
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 2.1e-10 71.2 81 42.0
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 6.6e-09 66.2 54 48.1
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.5e-08 65.1 83 38.6
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 2.5e-08 64.3 186 29.6
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.8e-07 60.1 51 51.0
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 5.3e-06 56.6 151 41.1


User provided reference genes

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