Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 2.0e-203 712.2 360 100.0
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.7e-199 699.1 360 98.1
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 5.6e-190 667.5 361 94.5
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 5.5e-153 544.7 364 79.7
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 8.2e-133 477.6 367 70.6
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.0e-131 473.0 343 72.3
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.5e-129 466.8 340 72.4
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.5e-62 244.2 348 45.7
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 4.0e-55 219.5 363 39.9
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 4.0e-55 219.5 363 39.9
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 1.6e-51 207.6 382 38.2
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 9.6e-49 198.4 389 36.5
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 3.7e-48 196.4 373 37.8
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 3.1e-47 193.4 388 35.6
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 2.5e-44 183.7 371 35.6
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 4.2e-44 183.0 449 32.5
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.2e-43 181.4 413 34.1
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.1e-41 174.9 371 33.4
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 4.1e-39 166.4 389 32.4
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 6.9e-39 165.6 368 34.8
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.2e-38 164.9 410 31.0
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 7.7e-38 162.2 374 33.2
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.7e-37 161.0 387 33.3
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 2.2e-37 160.6 376 33.0
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 2.2e-37 160.6 409 32.5
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 2.9e-37 160.2 382 33.5
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.8e-37 159.8 397 33.5
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 5.0e-37 159.5 371 34.8
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.4e-36 157.9 401 31.9
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.9e-36 157.5 360 34.7
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.9e-36 157.5 360 34.7
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.2e-36 156.4 360 34.7
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 4.2e-36 156.4 362 33.4
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 7.2e-36 155.6 306 37.3
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 9.4e-36 155.2 296 35.5
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 2.7e-35 153.7 384 32.3
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 1.0e-34 151.8 360 34.7
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.4e-34 151.4 377 32.1
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.4e-34 151.4 365 33.7
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.0e-34 150.2 377 34.0
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 5.1e-34 149.4 372 32.5
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 6.7e-34 149.1 185 44.3
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.1e-33 148.3 231 40.3
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 3.3e-33 146.7 175 47.4
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.3e-33 146.7 358 31.8
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 5.7e-33 146.0 330 32.1
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 7.4e-33 145.6 372 32.8
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 9.7e-33 145.2 299 37.1
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.3e-32 144.8 181 44.2
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.7e-32 144.4 375 33.1
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 3.7e-32 143.3 369 32.5
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 3.7e-32 143.3 358 36.9
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 6.3e-32 142.5 383 32.6
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 8.2e-32 142.1 366 31.4
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 9.1e-31 138.7 188 42.6
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.2e-30 138.3 180 44.4
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 2.0e-30 137.5 183 42.1
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 2.0e-30 137.5 377 32.1
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.6e-30 137.1 366 32.5
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.4e-30 136.7 352 31.5
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 4.5e-30 136.3 366 30.6
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.0e-29 135.2 389 31.4
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.7e-29 134.4 370 30.8
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.8e-29 133.3 363 32.5
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 3.8e-29 133.3 366 32.2
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 5.0e-29 132.9 350 32.3
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 5.0e-29 132.9 325 32.9
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 8.5e-29 132.1 361 31.0
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.1e-28 131.7 119 49.6
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-28 131.7 119 49.6
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-28 131.7 119 49.6
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.1e-28 131.7 119 49.6
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.1e-28 131.7 119 49.6
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.9e-28 131.0 374 30.5
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.5e-28 130.6 373 30.6
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 5.5e-28 129.4 370 31.9
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 7.2e-28 129.0 168 41.7
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 9.4e-28 128.6 373 30.8
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.4e-28 128.6 220 40.0
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 9.4e-28 128.6 140 48.6
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.2e-27 128.3 356 29.5
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.6e-27 127.9 150 44.7
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.6e-27 127.9 200 39.0
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.1e-27 127.5 139 44.6
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.6e-27 126.7 372 30.1
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 7.9e-27 125.6 378 30.2
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 5.1e-26 122.9 370 28.6
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 5.1e-26 122.9 391 30.2
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 5.1e-26 122.9 342 29.2
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 6.7e-26 122.5 164 37.2
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 8.8e-26 122.1 170 41.2
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.1e-25 121.7 387 31.5
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.3e-25 120.2 205 37.6
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 5.7e-25 119.4 196 37.2
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 9.7e-25 118.6 206 35.0
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 6.3e-24 115.9 198 38.4
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 6.3e-24 115.9 198 38.4
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 8.2e-24 115.5 354 28.5
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 8.2e-24 115.5 216 33.8
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 8.2e-24 115.5 267 31.5
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.8e-23 114.4 120 43.3
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 2.4e-23 114.0 172 39.5
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 2.4e-23 114.0 172 39.5
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 2.4e-23 114.0 343 31.8
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 3.1e-23 113.6 116 46.6
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 4.1e-23 113.2 259 32.4
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 5.3e-23 112.8 355 31.8
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 5.3e-23 112.8 193 37.8
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 2.6e-22 110.5 340 31.2
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 4.5e-22 109.8 349 28.7
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.7e-21 107.8 362 27.9
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 5.0e-21 106.3 365 26.3
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 5.0e-21 106.3 120 40.8
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 8.5e-21 105.5 310 29.0
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.9e-20 104.4 120 40.0
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.9e-20 104.4 120 40.0
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 9.4e-20 102.1 354 29.1
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.1e-19 100.9 241 28.2
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 4.7e-19 99.8 117 41.9
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.3e-17 93.6 338 27.5
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 2.2e-16 90.9 189 34.9
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-15 88.6 96 44.8
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.1e-15 88.6 199 34.7
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.4e-15 87.4 174 35.6
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 9.1e-15 85.5 109 44.0
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 1.6e-14 84.7 375 26.4
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.8e-13 80.1 284 28.2
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 3.8e-13 80.1 208 28.8
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 5.5e-12 76.3 303 24.1
SGA_v2.0_scaffold34G13602 Striga asiatica HOM05D005306 ORTHO05D006158 1.0e-10 72.0 415 26.0
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.8e-10 71.2 275 26.9
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 2.3e-10 70.9 169 27.8
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 4.0e-10 70.1 89 40.4
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 6.8e-10 69.3 282 28.4
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 5.7e-09 66.2 237 26.2
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 9.8e-09 65.5 169 30.2
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.4e-07 61.6 297 29.6
AagrBONN_evm.TU.Sc2ySwM_344.4066 Anthoceros agrestis HOM05D003400 ORTHO05D003687 4.1e-07 60.1 112 32.1
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 4.1e-07 60.1 129 33.3
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.2e-06 58.5 151 26.5
unitig_699.g19586 Utricularia gibba HOM05D033148 ORTHO05D006158 2.7e-06 57.4 76 44.7
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 5.9e-06 56.2 168 25.6


User provided reference genes

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