Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.5e-86 322.8 155 100.0
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 8.4e-42 174.1 93 91.4
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 7.1e-41 171.0 93 89.2
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 7.1e-41 171.0 93 89.2
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 7.1e-41 171.0 93 89.2
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.3e-37 160.2 90 84.4
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.0e-36 155.2 93 78.5
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 6.9e-36 154.5 91 82.4
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 6.9e-36 154.5 91 82.4
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.5e-35 153.3 93 76.3
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.9e-33 146.4 95 68.4
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.6e-32 143.3 93 74.2
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 2.1e-32 142.9 95 67.4
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.1e-32 142.9 95 67.4
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 2.7e-32 142.5 90 73.3
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 6.0e-32 141.4 93 69.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.0e-31 140.6 93 73.1
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.3e-31 140.2 93 68.8
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.8e-31 139.8 90 72.2
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 2.3e-31 139.4 93 72.0
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 3.0e-31 139.0 92 71.7
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 6.7e-31 137.9 93 66.7
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.7e-31 137.5 93 67.7
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.7e-31 137.5 93 67.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.7e-31 137.5 93 67.7
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.7e-31 137.5 93 67.7
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.1e-30 137.1 93 67.7
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 1.1e-30 137.1 93 71.0
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-30 137.1 90 65.6
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.1e-30 137.1 93 66.7
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 1.5e-30 136.7 93 71.0
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 1.5e-30 136.7 93 67.7
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.9e-30 136.3 92 67.4
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 2.5e-30 136.0 90 71.1
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 3.3e-30 135.6 90 64.4
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 4.3e-30 135.2 93 72.0
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 4.3e-30 135.2 90 72.2
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 4.3e-30 135.2 93 66.7
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 4.3e-30 135.2 90 65.6
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 9.6e-30 134.0 94 63.8
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 9.6e-30 134.0 90 67.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 9.6e-30 134.0 93 67.7
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 1.3e-29 133.7 92 67.4
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.3e-29 133.7 90 68.9
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.8e-29 132.5 93 67.7
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 3.7e-29 132.1 93 68.8
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 3.7e-29 132.1 93 65.6
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 4.8e-29 131.7 90 71.1
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 4.8e-29 131.7 93 64.5
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 4.8e-29 131.7 86 70.9
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 6.2e-29 131.3 90 66.7
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 8.1e-29 131.0 90 66.7
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 8.1e-29 131.0 93 67.7
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 1.1e-28 130.6 93 64.5
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.1e-28 130.6 90 66.7
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.4e-28 130.2 94 61.7
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.4e-28 130.2 96 63.5
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 1.8e-28 129.8 93 61.3
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.8e-28 129.8 93 66.7
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.8e-28 129.8 90 65.6
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.4e-28 129.4 93 64.5
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 2.4e-28 129.4 90 63.3
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 3.1e-28 129.0 93 60.2
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 3.1e-28 129.0 92 65.2
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 3.1e-28 129.0 90 67.8
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 3.1e-28 129.0 90 65.6
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 4.0e-28 128.6 92 65.2
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 4.0e-28 128.6 93 63.4
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 4.0e-28 128.6 90 65.6
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 4.0e-28 128.6 93 63.4
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 5.3e-28 128.3 90 61.1
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 5.3e-28 128.3 90 61.1
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 5.3e-28 128.3 90 63.3
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 5.3e-28 128.3 94 61.7
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 5.3e-28 128.3 93 64.5
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 6.9e-28 127.9 90 60.0
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.9e-28 127.9 90 66.7
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 6.9e-28 127.9 93 64.5
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.0e-28 127.5 93 59.1
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 9.0e-28 127.5 90 61.1
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 1.2e-27 127.1 93 63.4
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 1.2e-27 127.1 93 63.4
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 1.2e-27 127.1 90 60.0
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.2e-27 127.1 90 60.0
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 1.2e-27 127.1 93 63.4
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-27 127.1 93 63.4
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-27 127.1 93 63.4
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 1.5e-27 126.7 93 63.4
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.5e-27 126.7 90 62.2
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.0e-27 126.3 93 64.5
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.6e-27 125.9 90 60.0
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 2.6e-27 125.9 92 63.0
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.4e-27 125.6 93 63.4
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.4e-27 125.6 93 63.4
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 3.4e-27 125.6 91 65.9
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 4.5e-27 125.2 82 69.5
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 5.8e-27 124.8 90 58.9
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 5.8e-27 124.8 90 60.0
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 5.8e-27 124.8 90 64.4
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 7.6e-27 124.4 90 63.3
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 1.0e-26 124.0 90 57.8
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.0e-26 124.0 91 61.5
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.0e-26 124.0 93 64.5
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 2.2e-26 122.9 94 58.5
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 2.2e-26 122.9 93 64.5
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.9e-26 122.5 90 65.6
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 4.9e-26 121.7 85 60.0
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 6.5e-26 121.3 90 56.7
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.4e-25 120.2 91 60.4
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.4e-25 120.2 94 57.4
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.9e-25 119.8 89 65.2
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 1.9e-25 119.8 91 63.7
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.2e-25 118.6 90 58.9
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-24 116.3 94 58.5
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-24 116.3 94 58.5
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-24 116.3 94 58.5
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 2.7e-24 115.9 94 58.5
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.3e-23 113.6 90 55.6
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.3e-23 113.6 91 60.4
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 4.3e-22 108.6 87 57.5
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 7.4e-22 107.8 93 53.8
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.1e-21 106.3 88 59.1
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.8e-21 105.9 86 51.2
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 3.7e-21 105.5 86 55.8
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 3.7e-21 105.5 92 53.3
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 4.8e-21 105.1 86 51.2
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 3.1e-20 102.4 85 55.3
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.6e-19 99.4 75 57.3
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.3e-18 97.1 73 56.2
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 1.7e-18 96.7 76 52.6
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.5e-18 94.7 90 56.7
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 1.4e-17 93.6 88 48.9
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 1.9e-17 93.2 83 48.2
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.5e-17 92.8 61 67.2
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 9.3e-17 90.9 79 55.7
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.2e-16 90.5 89 51.7
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 7.9e-16 87.8 93 49.5
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 6.7e-15 84.7 90 50.0
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 8.7e-15 84.3 50 74.0
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 5.7e-14 81.6 93 48.4
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 5.7e-14 81.6 56 60.7
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.3e-13 80.5 52 67.3
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 1.4e-12 77.0 58 62.1
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 4.1e-12 75.5 86 52.3
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.0e-12 74.3 72 50.0
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 7.7e-11 71.2 83 45.8
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 8.5e-10 67.8 67 49.3
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-08 63.2 74 45.9
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.0e-07 60.8 65 50.8
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 3.9e-07 58.9 37 64.9


User provided reference genes

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