Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 2.6e-72 275.4 148 100.0
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 2.0e-69 265.8 148 95.9
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 2.0e-56 222.6 152 78.3
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 5.9e-45 184.5 157 67.5
Nitab4.5_0000471g0140 Nicotiana tabacum HOM05D007384 ORTHO05D008511 9.8e-32 140.6 159 57.9
Oeu056489.1 Olea europaea HOM05D007384 ORTHO05D008511 3.5e-21 105.5 154 39.6
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 4.3e-19 98.6 152 38.2
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 5.6e-19 98.2 169 40.2
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 2.1e-18 96.3 168 38.1
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 1.2e-16 90.5 160 40.6
Cc07_g16090 Coffea canephora HOM05D007384 ORTHO05D008511 2.6e-16 89.4 157 33.8
SalBow5G4202 Salvia bowleyana HOM05D007384 ORTHO05D008511 2.6e-16 89.4 156 37.8
SalBow5G0260 Salvia bowleyana HOM05D007384 ORTHO05D008511 3.4e-16 89.0 155 37.4
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 7.5e-16 87.8 156 42.9
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.3e-15 87.0 156 42.3
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 2.2e-15 86.3 161 36.6
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 2.9e-15 85.9 152 41.4
MSTRG.23314 Avicennia marina HOM05D007384 ORTHO05D008511 3.7e-15 85.5 150 32.7
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 4.9e-15 85.1 156 42.3
SGA_v2.0_scaffold47G17711 Striga asiatica HOM05D007384 ORTHO05D008511 8.3e-15 84.3 152 38.2
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.9e-14 83.2 156 42.3
EL10Ac6g14748 Beta vulgaris HOM05D007384 ORTHO05D008511 9.2e-14 80.9 162 35.8
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 1.6e-13 80.1 152 40.1
Hund19659 Selenicereus undatus HOM05D007384 ORTHO05D008511 2.1e-13 79.7 154 36.4
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 2.7e-13 79.3 162 35.8
Oeu028378.1 Olea europaea HOM05D007384 ORTHO05D008511 6.0e-13 78.2 159 34.0
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 7.8e-13 77.8 166 36.7
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 1.0e-12 77.4 148 43.2
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 1.7e-12 76.6 157 42.7
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 2.3e-12 76.3 160 36.2
Oeu028376.1 Olea europaea HOM05D007384 ORTHO05D008511 3.0e-12 75.9 159 33.3
Gorai.011G111700 Gossypium raimondii HOM05D007384 ORTHO05D008511 5.1e-12 75.1 148 42.6
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 5.1e-12 75.1 157 36.3
Oeu028527.1 Olea europaea HOM05D007384 ORTHO05D008511 5.1e-12 75.1 151 35.8
Rhsim10G0013800 Rhododendron simsii HOM05D007384 ORTHO05D008511 1.1e-11 73.9 156 41.0
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 1.1e-11 73.9 160 32.5
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 1.5e-11 73.6 150 38.7
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 1.9e-11 73.2 145 43.4
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 2.5e-11 72.8 170 39.4
DCAR_001367 Daucus carota HOM05D007384 ORTHO05D008511 4.3e-11 72.0 147 38.1
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 2.8e-10 69.3 165 33.9
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 3.6e-10 68.9 161 36.0
CSS0019294 Camellia sinensis var. sinensis HOM05D007384 ORTHO05D008511 4.7e-10 68.6 75 52.0
SGA_v2.0_scaffold2G01297 Striga asiatica HOM05D007384 ORTHO05D008511 4.7e-10 68.6 146 35.6
MSTRG.2538 Avicennia marina HOM05D007384 ORTHO05D008511 8.1e-10 67.8 152 39.5
Rhsim08G0006700 Rhododendron simsii HOM05D007384 ORTHO05D008511 8.1e-10 67.8 176 37.5
Manes.12G142100 Manihot esculenta HOM05D007384 ORTHO05D008511 1.1e-09 67.4 173 36.4
Sc07g0001520 Simmondsia chinensis HOM05D007384 ORTHO05D008511 1.1e-09 67.4 145 33.8
Lalb_Chr11g0068051 Lupinus albus HOM05D007384 ORTHO05D008511 1.4e-09 67.0 172 36.0
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 1.8e-09 66.6 151 38.4
SalBow6G3892 Salvia bowleyana HOM05D007384 ORTHO05D008511 1.8e-09 66.6 148 31.1
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 3.1e-09 65.9 162 40.7
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 3.1e-09 65.9 162 40.7
TAR520G0001 Trochodendron aralioides HOM05D007384 ORTHO05D008511 3.1e-09 65.9 170 28.8
Phvul.002G264500 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 5.2e-09 65.1 156 38.5
TAR628G0188 Trochodendron aralioides HOM05D007384 ORTHO05D008511 5.2e-09 65.1 170 29.4
unitig_736.g22624 Utricularia gibba HOM05D007384 ORTHO05D008511 5.2e-09 65.1 140 31.4
Hund03542 Selenicereus undatus HOM05D007384 ORTHO05D008511 8.9e-09 64.3 162 32.7
TWI74G0307 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 1.5e-08 63.5 165 35.2
Atru.chr4.403 Acer truncatum HOM05D007384 ORTHO05D008511 2.0e-08 63.2 154 37.7
ECA238G3631 Erigeron canadensis HOM05D007384 ORTHO05D008511 2.6e-08 62.8 79 44.3
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 7.6e-08 61.2 160 33.8
CsaV3_2G017570 Cucumis sativus L. HOM05D007384 ORTHO05D008511 7.6e-08 61.2 182 31.9
PGR004G1153 Punica granatum HOM05D007384 ORTHO05D008511 1.7e-07 60.1 151 37.1
Manes.13G077680 Manihot esculenta HOM05D007384 ORTHO05D008511 2.9e-07 59.3 159 37.7
unitig_899.g14602 Utricularia gibba HOM05D007384 ORTHO05D008511 2.9e-07 59.3 146 33.6
TPR.G40723 Trifolium pratense HOM05D007384 ORTHO05D008511 1.1e-06 57.4 137 36.5
Carub.0008s2571 Capsella rubella HOM05D012887 ORTHO05D008511 1.4e-06 57.0 159 32.1
Sed0027168 Sechium edule HOM05D007384 ORTHO05D008511 1.4e-06 57.0 157 31.2
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 1.9e-06 56.6 154 37.7
CiPaw.04G092400 Carya illinoinensis HOM05D007384 ORTHO05D008511 2.4e-06 56.2 171 30.4
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 3.2e-06 55.8 159 33.3
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 3.2e-06 55.8 161 33.5
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 5.4e-06 55.1 176 31.2
Prupe.6G173600 Prunus persica HOM05D007384 ORTHO05D008511 5.4e-06 55.1 165 34.5


User provided reference genes

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